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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggaatgtgtttgaaaaattataactttgtttctttggggttggggggttgatttccaccttgtatagttacacgttagttgtttttgttttgtggttagGATGATGGATGTGTGTACCTGGTCCTGGAGTTTTGTGCTGGAGGGAATCTTGCTTCTTATATTCAGAATCATGGGAGAGTTCAGCAACAAATAGCCAGAA

Basic information

species Glycine max
transcript GLYMA04G39350.4
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519292|gb|BM188334.1|BM188334
EST:     TGTCCTCCGTTAACCACCCCAATATTATTCGCCTTCTTCACTTCTTCCAG                         GATGATGGATGTGTGTACCTGGTCCTGGAGTTTTGTGCTGGAGGGAATCTT
genomic: TGTCCTCCGTTAACCACCCCAATATTATTCGCCTTCTTCACTTCTTCCAGgttctctcct ... ttgtggttagGATGATGGATGTGTGTACCTGGTCCTGGAGTTTTGTGCTGGAGGGAATCTT
EST: gi|18732874|gb|BM527298.1|BM527298
EST:     TGTCCTCCGTTAACCACCCCAATATTATTCGCCTTCTTCACTTCTTCCAG                         GATGATGGATGTGTGTACCTGGTCCTGGAGTTTTGTGCTGGAGGGAATCTT
genomic: TGTCCTCCGTTAACCACCCCAATATTATTCGCCTTCTTCACTTCTTCCAGgttctctcct ... ttgtggttagGATGATGGATGTGTGTACCTGGTCCTGGAGTTTTGTGCTGGAGGGAATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggttgatttccaccttgtatagttacacgttagttgtttttgttttgtggttagGATGATGGATGTGTGTACCTGGTCCTGGAGTTTTGTGCTGGAGGGAATCTTGCTTCTTATATTCAGAATCATGGGAGAGTTCAGCAACAAATAGCCAGAA
 ggttgat  putative branch site (score: 5)
                                     tttttgtttt  putative PPT
                                     tttttgtttt  TA-rich tract