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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACTCAACCCTCGCCTCAAGGCATGTTTGGATTGCGAGATCAATTTCTTGTCCTCCGTTAACCACCCCAATATTATTCGCCTTCTTCACTTCTTCCAGgttctctcctctttttcctttcatttcgcttatttcccattttcattgccatggtagatggttttccgttttatttttcccaccctctttgttaattttg...

Basic information

species Glycine max
transcript GLYMA04G39350.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39350.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0044g00630.t01 (Vitis vinifera), 5'ss of exon 1
CAAACTCAACCCTCGCCTCAAGGCATGTTTGGATTGCGAGATCAATTTCTTGTCCTCCGTTAACCACCCCAATATTATTCGCCTTCTTCACTTCTTCCAGgttctctcctctttttcctttcatttcgcttatttcccattttcattgccatggtagatggttttccgttttatttttcccaccctctttgttaattttg---
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CAAACTCAACCGTAACCTCAAGACCTCCCTGGACTGTGAGATCAACTTCTTGTCTTCTGTTAGCCACCCCAACATCATTCGCCTTCTTCATGTCTTCCAGgttggtttttaccatagattcc-tcccttcaattgcccacccagttcattaattttgat--tttcagggattttttttgcaactatcttttgtagcttcaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058572|gb|CA801486.1|CA801486
EST:     TGTCCTCCGTTAACCACCCCAATATTATTCGCCTTCTTCACTTCTTCCAG                         GATGATGGATGTGTGTACCTGGTCCTGGAGTTTTGTGCTGGAGGGAATCTT
genomic: TGTCCTCCGTTAACCACCCCAATATTATTCGCCTTCTTCACTTCTTCCAGgttctctcct ... ttgtggttagGATGATGGATGTGTGTACCTGGTCCTGGAGTTTTGTGCTGGAGGGAATCTT
EST: gi|17519292|gb|BM188334.1|BM188334
EST:     TGTCCTCCGTTAACCACCCCAATATTATTCGCCTTCTTCACTTCTTCCAG                         GATGATGGATGTGTGTACCTGGTCCTGGAGTTTTGTGCTGGAGGGAATCTT
genomic: TGTCCTCCGTTAACCACCCCAATATTATTCGCCTTCTTCACTTCTTCCAGgttctctcct ... ttgtggttagGATGATGGATGTGTGTACCTGGTCCTGGAGTTTTGTGCTGGAGGGAATCTT