Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151408691|gb|EV278499.1|EV278499EST: CGCTATAACCATCCACGCCAAACCTGGTTCCAAATCCGCATCCGTAACTG ATATAAGCGATGAAGCGGTGGGAGTGCAAATTGACGCACCTGCGAGGGATG
genomic: CGCTATAACCATCCACGCCAAACCTGGTTCCAAATCCGCATCCGTAACTGgtctttctct ... taataagcagATATAAGCGATGAAGCGGTGGGAGTGCAAATTGACGCACCTGCGAGGGATG
EST:
gi|15203566|gb|BI426334.1|BI426334EST: GCATCCGTAACTG ATATAAGCGATGAAGCGGTGGGAGTGCAAATTGACGCACCTGCGAGGGATG
genomic: GCATCCGTAACTGgtctttctct ... taataagcagATATAAGCGATGAAGCGGTGGGAGTGCAAATTGACGCACCTGCGAGGGATG
EST:
gi|21677224|gb|BQ629575.1|BQ629575EST: CGCTATAACCATCCACGCCAAACCTGGTTCCAAATCCGCATCCGTAACTG ATATAAGCGATGAAGCGGTGGGAGTGCAAATTGACGCACCTGCGAGGGATG
genomic: CGCTATAACCATCCACGCCAAACCTGGTTCCAAATCCGCATCCGTAACTGgtctttctct ... taataagcagATATAAGCGATGAAGCGGTGGGAGTGCAAATTGACGCACCTGCGAGGGATG
EST:
gi|298190502|gb|HO032623.1|HO032623EST: CGCTATAACCATCCACGCCAAACCTGGTTCCAAATCCGCATCCGTAACTG ATATAAGCGATGAAGCGGTGGGAGTGCAAATTGACGCACCTGCGAGGGATG
genomic: CGCTATAACCATCCACGCCAAACCTGGTTCCAAATCCGCATCCGTAACTGgtctttctct ... taataagcagATATAAGCGATGAAGCGGTGGGAGTGCAAATTGACGCACCTGCGAGGGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttcgattataattaataaatgcgattgtggattttcttttcttaataagcagATATAAGCGATGAAGCGGTGGGAGTGCAAATTGACGCACCTGCGAGGGATGGCGAAGCAAATGCGGCTCTTCTCGATTACATCAGTTCT
tcttaat putative branch site (score: 3)
ttttcttttcttaat CT-rich tract
attataattaataaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctttctctttctccatctctctatttcgcgtttcttcgattataattaataaatgcgattgtggattttcttttcttaataagcagATATAAGCGATGAAGCGGTGGGAGTGCAAATTGACGCACCTGCGAGGGATGGCGAAGCAAATGCGGCTCTTCTCGATTACATCAGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA