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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTCTTCCAAATAAGATTTTCAAAATCGAGGAATCACCGTTGCATGAATTTTATGGTCATGCAAGTGATGTCTTGGATTTGGCTTGGTCCAGTTCAGATgtgagtttaactttcagaagcttgttatttttgcacccacttatactataatttatgtttgttctgtttgcaaattctgttaaatctgatctcgagttcctcttgcag

Basic information

species Glycine max
transcript GLYMA04G39290.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39290.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0044g00880.t01 (Vitis vinifera), 5'ss of exon 1
CGTTCTTCCAAATAAGATTTTCAAAATCGAGGAATCACCGTTGCATGAATTTTATGGTCATGCAAGTGATGTCTTGGATTTGGCTTGGTCCAGTTCAGATgtgagtttaactttcagaagcttgttatttttgc---acccacttatactataatttatg--tttgttctgtttgcaaattctgttaaatctgatctcgagttcctcttgcag
 ||| | ||  ||||||||||  | || ||||| || ||  |||| || ||  |||| ||||| ||||||||||||||| ||||||||||||  ||  ||||||||| | |   | ||| |||   | |||||    ||  | ||||  |   |||||    ||| || ||  | ||  ||   |  |||   |     | ||    ||||||
TGTTATCCCTGATAAGATTTTTCAGATTGAGGAGTCGCCACTGCAAGAGTTCCATGGCCATGCCAGTGATGTCTTGGATCTGGCTTGGTCCAAATCTAATgtgagttaatccagctgaaactttacaattttgtgttacagaattatctttgtatttaaaccttttttttgggtccatgttgaatctaatgctaaacttacttttggttgcag