Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGCCTTAAATTTGGAATTCAGTGATCACCTCACATACTTGCCTGGAATGGCTCCTAGATCTGCAAATCAAGCCTCACTTGAAAATGGCGGCATGCAGgtttcaactaattatttttcttgtacagtttttttaacccctagaaatggacctgcaacaaacaggctaattaattagcattcacatctccattgtgttcttatttgatagtgttttatactgtttcctgttag

Basic information

species Glycine max
transcript GLYMA04G39260.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39260.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0044g00950.t01 (Vitis vinifera), 5'ss of exon 1
AACAGCCTTAAATTTGGAATTCAGTGATCACCTCACATACTTGCCTGGAATGGCTCCTAGATCTGCAAATCAAGCCTCACTTGAAAATGGCGGCATGCAGgtttcaactaattatttttcttgtacagtttttttaacccctagaaatggacctgcaacaaacaggctaattaattagcattcacatctccattgtgttcttatttgatagtgttttatactgtttcctgttag
|||||| ||  |  ||||||||| |||| | ||||| ||| |||| || ||||||||||||||||| ||||||||     |||||||||| ||||||||||||  || | || |||  | ||        | | |      |    ||    || || | |  ||| |   | | |||  |     ||    ||   || ||   || |||                       
AACAGCATTGCACATGGAATTCACTGATGAACTCACCTACATGCCGGGCATGGCTCCTAGATCTGCCAATCAAGCAAAGTTTGAAAATGGTGGCATGCAGgttcgaatttataattcatttt-------ctctctggaattt----atttttcttcatctaggaggttttctcagtagtttatttttccatgttacattttt-cctgttag-----------------------