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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACGATGGGGAATCCATGGGATCAGTCTTCCCGGAAGGGTTACATTTGCACCAGGCAATGTTGGATTTGCGACCTTTGGTGCACCTCGCCCTACAGAGgtatatgtcaaaaccttgttttatataggttgccataatttgtcatacaactgatttgtgctctttcatttttccttgttttactgcag

Basic information

species Glycine max
transcript GLYMA04G39180.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39180.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv04s0044g01180.t01 (Vitis vinifera), 5'ss of exon 15
TGGACGATGGGGAATCCATGGGATCAGTCTTCCCGGAAGGGTTACATTTGCACCAGGCAATGTTGGATTTGCGACCTTTGGTGCACCTCGCCCTACAGAGgtatatgtcaaa------accttgttttatataggttg-ccataatttgtcat-acaactgat-ttgtgctctttcatttttccttgttttactgcag
|||| |||||||| |||||||||| |  ||||| ||||||||||| |||||||| || ||||| || ||| | ||||||||||| || || ||||  ||||||      |||      | |||  | | |     ||| | ||||||| | || ||| |||||  ||   |||| |||||||   ||           
TGGAAGATGGGGAGTCCATGGGATTACACTTCCTGGAAGGGTTACGTTTGCACCTGGAAATGTGGGGTTTTCTACCTTTGGTGCGCCCCGTCCTATGGAGgtaagcagaaaagtactcatcttagtctttgccatttgactataatttattatgacagctgatgctggtttcttccatttttatatgcag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20815035|gb|BQ299513.1|BQ299513
EST:     GATTTGCGACCTTTGGTGCACCTCGCCCTACAGAG                         ACACAAATTGTTAGTGATGAAACTTGGAAATTAGTAGATGATATCTGGGAT
genomic: GATTTGCGACCTTTGGTGCACCTCGCCCTACAGAGgtatatgtca ... tttactgcagACACAAATTGTTAGTGATGAAACTTGGAAATTAGTAGATGATATCTGGGAT
EST: gi|51343629|gb|CO984362.1|CO984362
EST:     GGATTTGCGACCTTTGGTGCACCTCGCCCTACAGAG                         ACACAAATTGTTAGTGATGAAACTTGGAAATTAGTAGATGATATCTGGGAT
genomic: GGATTTGCGACCTTTGGTGCACCTCGCCCTACAGAGgtatatgtca ... tttactgcagACACAAATTGTTAGTGATGAAACTTGGAAATTAGTAGATGATATCTGGGAT