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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGAAGTTTTGGTAGTTGGGTGTGGTAACTCTGGGATGGAGATTGCTTATGATCTCAATGACTGGGGTGCAAACACTTCTATTCTCATCCGAAATCCGgtaataattttttcatccactatctgtgttgggatattatctatcattttgtgtcattaaccaaactaaaaatcggttaaacaatctcatcttatgtgcc...

Basic information

species Glycine max
transcript GLYMA04G39160.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39160.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G091819_T01 (Zea mays), 5'ss of exon 1
CAAAGAAGTTTTGGTAGTTGGGTGTGGTAACTCTGGGATGGAGATTGCTTATGATCTCAATGACTGGGGTGCAAACACTTCTATTCTCATCCGAAATCCGgtaataattttttcatccactatctgtgttgggatattatctatcattt-tgtgtcattaacc--aaactaaaaatcggttaaacaatctcatcttatgtgcc-
 ||   |||  |||| ||||||||||| |||||||| ||||||||||| ||||||||     ||   || |   | || ||  |  | ||||| |  |||||| ||  ||||  ||  | | | | | |||  |  ||||   | |||| |  |   | |     |||  | ||     ||   |  | ||    ||  |    
GAAGAGAGTCCTGGTGGTTGGGTGTGGCAACTCTGGCATGGAGATTGCATATGATCTTGCCTACAATGGAGTGGAAACCTCCTTGGTTATCCGTAGCCCGgta-ta--ttttctatttattttttctcttgtta-gttataagtaatttatacgctttcagttcgaaatgataacatattttggccttttctagctagatatat