1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGCTCCAAATAATCAAGTTGACAATGACATTCTATCTTTGCTTGATTGTTTCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAGgtgtgcaatctatttttgttatttgtatttatgcatttattgtgagaaaatcttggcatgattgtttctatttttatggatgttgtcagatgctccccaa...
species | Glycine max |
transcript | GLYMA04G39140.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAG AACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCAEST: gi|208029136|gb|GD830618.1|GD830618
genomic: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAGgtgtgcaatc ... gggatgacagAACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCA
EST: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAG AACATTGATGATCCTGATCAGGCAAACAATGTCGATGGTGCACTGTGTTCAEST: gi|207757945|gb|GD727725.1|GD727725
genomic: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAGgtgtgcaatc ... gggatgacagAACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCA
EST: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAG AACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCAEST: gi|193692759|gb|FK632876.1|FK632876
genomic: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAGgtgtgcaatc ... gggatgacagAACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCA
EST: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAG AACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCAEST: gi|207720169|gb|GD703956.1|GD703956
genomic: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAGgtgtgcaatc ... gggatgacagAACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCA
EST: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAG AACATTGATGATCCTGATCAGGCAAACAATGTCGATGGTGCACTGTGTTCAEST: gi|214005605|gb|DB984613.1|DB984613
genomic: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAGgtgtgcaatc ... gggatgacagAACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCA
EST: GCTGTGAAAGAAAACAACAGAATTGAG AACATTGATGATCCTGATCAGGCAAACAATGCCGATAGTGCACTGTGTTCAEST: gi|193683060|gb|FK620994.1|FK620994
genomic: GCTGTGAAAGAAAACAACAGAATTGAGgtgtgcaatc ... gggatgacagAACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCA
EST: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAG AACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCAEST: gi|209712535|gb|BW653704.1|BW653704
genomic: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAGgtgtgcaatc ... gggatgacagAACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCA
EST: ATTGGCTGTGAAAGAAAACAACAGAATTGAG AACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCAEST: gi|214008734|gb|DB989592.1|DB989592
genomic: ATTGGCTGTGAAAGAAAACAACAGAATTGAGgtgtgcaatc ... gggatgacagAACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCA
EST: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAG AACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCAEST: gi|19453569|gb|BM954979.1|BM954979
genomic: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAGgtgtgcaatc ... gggatgacagAACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCA
EST: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAG AACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCAEST: gi|193540620|gb|FK496510.1|FK496510
genomic: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAGgtgtgcaatc ... gggatgacagAACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCA
EST: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAG AACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTAC
genomic: TCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAGgtgtgcaatc ... gggatgacagAACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTT-C
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTCCAAATAATCAAGTTGACAATGACATTCTATCTTTGCTTGATTGTTTCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAGgtgtgcaatctatttttgttatttgtatttatgcatttattgtgagaaaatcttggcatgattgtttctatttttatggatgttgtcagatgctccccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccca