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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacctttaaccttttcttgtatgtgatagtgggttagtgcgccaataagttgttaattagttcaaaaatctaatcacgcgaattttagatgctatattatgtattcagcttgatctaatactaataccctatgtgtgcctggttctgcag

Basic information

species Glycine max
transcript GLYMA04G36860.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36860.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os04g40950.1 (Oryza sativa), 5'ss of exon 11
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacctttaaccttttcttgtatgtgatag-tgggttagtgcgccaataagttgttaattagttcaaaaatctaatcacgcgaattttagatgctatattatgtattcagcttgatctaatactaataccctatgtgtgcctggttctgcag
 ||||| || |||||||||||||| || |||||  | ||| | |||||||| |||||||| ||||||||||||||||| |||||||||||||||||        |  | |   || ||  || || |    | ||     | |   | |||  || ||||| |         | || |  | |  ||   | |   | || |                                             
GTCAAGCATCTTTGATGCAAAGGCCGGTATTGCTCTCAATGACAACTTTGTTAAGCTTGTGTCTTGGTATGACAACGAATGGGGATACAGgtaatc--------atttctatgtgcattagaaagctatacttgttttttagttcatggttgtttggttcata---tcgcgtaggctagctctccattagaaagc-tatact---------------------------------------------

upper sequence: GLYMA04G36860.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 10
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacctttaaccttttcttgtatgtgatagtgggttagtgcgccaataagttgttaattagttcaaaaatctaatcacgcgaattttagatgctatattatgtattcagcttgatctaatactaataccctatgtgtgcctggttctgcag
 || || || || || || ||||||||||||||  | ||  | |||||||| ||||||||| | ||||| |||||||||||||| ||||||| | |||| |  |          ||      || |      || |   | |   |    |||| | ||  |   || |||   |   ||||     |||| || || |                                               
GTCGAGCATCTTCGACGCCAAGGCTGGAATTGCTCTTAACGATAACTTTGTCAAGCTTGTCGCCTGGTACGACAACGAGTGGGGTTACAGgtgagccacttgca----------gttcaaactattaaccatgtacaatactccatgcccaatttgctctta---ctgatctttc---ttttttgaactattttctgcag----------------------------------------------

upper sequence: GLYMA04G36860.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os02g38920.2 (Oryza sativa), 5'ss of exon 10
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacctttaaccttttcttgtatgtgatagtgggttagtgcgccaataagttgttaattagttcaaaaatctaatcacgcgaattttagatgctatattatgtattcagcttgatctaatactaataccctatgtgtgcctggttctgcag
 || || || |||||||| |||||||| ||||| ||||   | |  || ||||||||||| || ||||| |||||||| ||||||||||||| |        |   | ||       ||| ||  |  ||||    ||  |  |      | |  | | |||   |   |  | |  |||  ||                                                              
GTCCAGCATCTTTGATGCCAAGGCTGGCATTGCTTTGAGCGACACGTTCGTGAAGCTTGTGTCCTGGTACGACAACGAATGGGGATACAGgttagtgtgtgctg--cattatgaaagtgtaattctctgtta-catgctcacga-----cagtctgcttaaaccacattttcctctgattgcag--------------------------------------------------------------

upper sequence: GLYMA04G36860.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G071630_T01 (Zea mays), 5'ss of exon 11
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaa---tccacctttaaccttttcttgtatgtgatagtgggttagtgcgccaataagttgttaattagttcaaaaatctaatcacgcgaattttagatgctatattatgtattcagcttgatctaatactaataccctatgtgtgcctggttctgcag
 || || || |||||||| |||||||| ||||| |||||    ||||||||||||||||| || ||||| |||||||||||||||||||||| |       ||| ||    |    ||  | |||    ||| | ||| ||   | | ||  |||    | |     | |  ||       ||| ||                                                              
GTCTAGCATCTTTGATGCGAAGGCTGGCATTGCCTTGAACGGCAACTTTGTGAAGCTTGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagtagttgcctctacagatcatctgactttgaactagggcttgtgtgcacttcaatttctaa---atcctggtttattttccgtttcttttcag--------------------------------------------------------------

upper sequence: GLYMA04G36860.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G176307_T01 (Zea mays), 5'ss of exon 11
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacct--ttaaccttttcttgtatgtgatagtgggttagtgcgccaataagttgttaattagttcaaaaatctaatcacgcgaattttagatgctatattatgtattcagcttgatctaatactaataccctatgtgtgcctggttctgcag
 || || || |||||||| |||||||| ||||| |||||    ||||| |||||||| || || ||||| |||||||||||||||||||||| |     ||  ||  | |   |   ||| |||   ||     | |         | |  |    | ||||||| |  | |     |  | ||    |                                                           
GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggctagttgccttcaccgattatctgactctgaccaggagga-----gggcttctgcgcacttcaaaatttaatttctatgtctcttttcag-----------------------------------------------------------

upper sequence: GLYMA04G36860.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S49_34V6.1 (Physcomitrella patens), 5'ss of exon 5
----------ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgta--atccacctttaaccttttcttgtatgtgatagtgggttagtgcgccaataagttgttaattagttcaaaaatctaatcacgcgaattttagatgctatattatgtattcagcttgatctaatactaataccctatgtgtgcctg-gttctgcag
           ||  | || || ||||| || |||||  | ||  ||    | || ||||||||||| ||| | |||||||||||||||||||| ||||||||  ||||| ||   ||||   ||                ||  |   | |  || | | |  |     ||    || |  | |  |||  ||  |         |||| |||||||   ||| |   |  |  ||| ||| ||  |  || ||||||
GTGACAGCCGGTCCGGCATCTTCGATGCTAAAGCTGGGTTCGCCATGGCCGACAATTTTGTGAAGCTCGTCGCGTGGTATGACAACGAGTGGGGCTACAGgtatcatccatctcccacctccactc---------------ttcctcttcta--aaatcgct--tcgcgccatgtctccagcctcttgaacattgca---------atgt-ttcagctcactctgacgttg-tttcctttgtttggatatgtgctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208321242|gb|GE119463.1|GE119463
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|208298910|gb|GE093691.1|GE093691
EST:     AGAACTTTGTGAAGCTTGTCTCTTGGTATGAACAACGAGTGGGGATACAG                         CTCACGTGTCATT
genomic: AGAACTTTGTGAAGCTTGTCTCTTGGTATGA-CAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATT
EST: gi|21602078|gb|BQ612409.1|BQ612409
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|16279402|gb|BI943417.1|BI943417
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCT
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCT
EST: gi|208185308|gb|GD981626.1|GD981626
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|16277358|gb|BI942338.1|BI942338
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTT
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTT
EST: gi|38192841|gb|CF922047.1|CF922047
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAAGTCTTTTTAAG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAA-GTCTTTTTAAG
EST: gi|208214884|gb|GE015063.1|GE015063
EST:     AGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGAGTACAG                         CTCACGTGTCATTGACCTGCTTGTTATTCGTTGCCAAGAAGTCTTTTTAA
genomic: AGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGA-TACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGT-ATTCGTTGCCAAGAAGTCTTTTTAA
EST: gi|208187327|gb|GD982193.1|GD982193
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCA
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCA
EST: gi|16277112|gb|BI942210.1|BI942210
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGC
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGC
EST: gi|193655238|gb|FK600126.1|FK600126
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCT
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCT
EST: gi|19934850|gb|BQ079880.1|BQ079880
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGC
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGC
EST: gi|208180355|gb|GD973724.1|GD973724
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|207735999|gb|GD709848.1|GD709848
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|193341123|gb|FK305509.1|FK305509
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|207761745|gb|GD734648.1|GD734648
EST:     AGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGAGTACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAG
genomic: AGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGA-TACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAG
EST: gi|193535356|gb|FK489996.1|FK489996
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTT-AAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|15815670|gb|BI787945.1|BI787945
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|193716718|gb|FK654276.1|FK654276
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTANGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|48575483|gb|CO036426.1|CO036426
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|193543197|gb|FK500584.1|FK500584
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTT-AAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|31306801|gb|CD392004.1|CD392004
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATT
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATT
EST: gi|208063460|gb|GD863294.1|GD863294
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTAGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTT
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGT-GTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTT
EST: gi|22525856|gb|BU084667.1|BU084667
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|16279506|gb|BI943471.1|BI943471
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCT
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCT
EST: gi|208184780|gb|GD982974.1|GD982974
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATT
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATT
EST: gi|208329733|gb|GE130558.1|GE130558
EST:     AAGAACTTTGTGAAGCTTGTCTCTTAGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTT
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTT
EST: gi|15815409|gb|BI787684.1|BI787684
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|192305706|gb|FG995354.1|FG995354
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|27424870|gb|CA936390.1|CA936390
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|208321178|gb|GE125111.1|GE125111
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTACTTTTTAAG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGT-CTTTTTAAG
EST: gi|22525847|gb|BU084658.1|BU084658
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTT
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTT
EST: gi|208196923|gb|GD997962.1|GD997962
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacc ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGgtaatccacctttaaccttttcttgtatgtgatagtgggttagtgcgccaataagttgttaattagttcaaaaatctaatcacgcgaattttagatgctatattatgtattcagcttgatctaatactaataccctatgtgtgcctggttctgcag

- - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC