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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCGTCTACTGCCCCGGGGGACCTGACTCCGATTTCGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGgtagggtttatgttagttttgtcttctgtgttagggtaaatggaactgattttaagagtgaatagttgagtcaaattaatccctatattctgttgatttt...

Basic information

species Glycine max
transcript GLYMA04G36790.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36790.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g40840.1 (Oryza sativa), 5'ss of exon 1
TCTGCGTCTACTGCCCCGGGGGACCTGACTCCGATTTCGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGgtagggtttatgttagttttgtcttctgt-gttagggtaaatggaactgattttaagagtgaatagttgagtcaaattaatccctatattctgttgatttt--
||||||| ||||||||||| || || |||||||| ||||||||||| || ||||| ||||| || ||||| || |||||||||||||| ||||| || ||||  | ||||  | | |     ||  |||   | ||  | |    ||    | | ||| |||   |    |  |   |    |   | || | ||||  |   
TCTGCGTGTACTGCCCCGGAGGCCCCGACTCCGACTTCGAGTACAGCACCCAGTCCTACACCGGCTACGAGCCCACCAGCATGCGCGCCATTCGAGCAAGgt--gatttacctcactggctactgatgtcacttggaaatactataccacctgtgaga-tgagctgcacggcgatgctttctctagtgttgttttgaagtatg

upper sequence: GLYMA04G36790.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G100872_T01 (Zea mays), 5'ss of exon 1
TCTGCGTCTACTGCCCCGGGGGACCTGACTCCGATTTCGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGgtagggtttatgtta-gttttgtcttctgtgttagggtaaatggaactgattttaagag---tgaatagttgagtcaaattaatccctatattctgttgatttt
|||| ||||||||||| || || || |||||||| ||||||||||| || || || |||||||| |||||||| ||||||||||| || ||||| || |||||   |   ||    |  |||   ||  || |    | ||  |   | |||| ||      || |     ||||  | | | | | | | || ||||      
TCTGTGTCTACTGCCCGGGCGGTCCCGACTCCGACTTCGAGTACAGCACGCAATCCTACACTGGATACGAACCCACCAGCATGCGTGCCATTCGGGCAAGgtaatttcactggagtgcattggtgtccatgcttcctttaactgcttttatttaaacttttctgtacctaggagtgcagtgacttcgtgt-ttgtgttaca---

upper sequence: GLYMA04G36790.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G359735_T03 (Zea mays), 5'ss of exon 1
TCTGCGTCTACTGCCCCGGGGGACCTGACTCCGATTTCGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGgtagggtttatgttagttttgtcttctgtgttag-ggtaaatggaactgat------tttaagagtgaatagttgagtcaaattaatccctatattctgttgatttt
|||| |||||||||||||| || || || ||||| ||||||||||| || || || ||||| || ||||| || ||||||||||| || ||||| || ||||  | ||||  | |   | |   |   ||     | |||||   ||  ||      | |   | ||  |   |   | ||  || |  |  | ||  | | |    
TCTGTGTCTACTGCCCCGGCGGTCCCGATTCCGACTTCGAGTACAGCACGCAATCCTACACGGGATACGAGCCCACCAGCATGCGTGCCATTCGGGCAAGgt--gatttagctca--ctggctgttgatgccgctgataaatactacacatgtaccttcttgtattgcttgaattgatgaaggtagtatccttgtttaggttag---

upper sequence: GLYMA04G36790.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G50320.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTGCGTCTACTGCCCCGGGGGACCTGACTCCGATTTCGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGgtagggtttatgttagttttgtcttctgtgttagggtaaatggaactgattttaagagtgaatagttgagtcaaattaatccctatattct-gttgatttt-----------
| ||||| || || ||||| ||||||||||| || || ||||| |||||||||||||||||||| || || || ||||||||||| || ||||| || ||||   |        ||   |||||||||||||| || || || ||||  | |||    |      ||||   |    |     |    | | | |  ||||           
TATGCGTTTATTGTCCCGGTGGACCTGACTCTGACTTTGAGTATAGTACTCAGTCTTACACTGGATATGAGCCTACCAGCATGCGAGCTATTCGAGCCAGgtgaag--------ag---tgtcttctgtgttatgg-aattgaaacttgtattacagcttctggattgatctagtaaagggtttggggtttaggtagttttgggtgaaattt

upper sequence: GLYMA04G36790.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 1
TCTGCGTCTACTGCCCCGGGGGACCTGACTCCGATTTCGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGgtagggtttatgtt--agttttg-tcttctgtgttagggtaaatggaact--gattttaagagtgaatagttgagtcaaattaatccctatattctgttgatttt
| || || || ||||| || |||||||| || ||||| ||||||||||| ||||| |||||||| ||||| || |||||||||||||| |||||||| ||||||||||| | ||   |||||  | || | ||||    | |       |  |||  |  ||    ||||   |   || | | ||  |  ||  |  |||    
TTTGTGTTTATTGCCCTGGAGGACCTGATTCTGATTTTGAGTACAGTACACAGTCGTACACTGGATACGAGCCCACCAGCATGCGCGCGATTCGTGCTAGgtagggtttttctttaggttttaattttatttgttgtattgatctctgtttggatgatgggaaatcataggaaaaggaactaagtcttttcat--taatgaa---

upper sequence: GLYMA04G36790.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S185_41V6.1 (Physcomitrella patens), 5'ss of exon 2
TCTGCGTCTACTGCCCCGGGGGACCTGACTCCGATTTCGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGgta-gggtttatgttag---ttttgtcttctgtgttagggtaaatggaactgattttaagagtgaatagttgagtcaaattaatccctatattctgttgatttt---
| || || |||||||| || || || ||||| ||||| || ||||||||||| || ||||||||||||||||| ||||||||||| || || || |||||||| || ||| | || |    | |  | | |    |   | |  |     ||||||| |   |      |   ||| |  |||||      ||   || | |     
TTTGTGTTTACTGCCCTGGAGGGCCGGACTCTGATTTTGAATACAGTACTCAATCATACACTGGTTACGAACCTACCAGCATGCGAGCCATCCGGGCGAGgtatggatttgtattcgaacctataaccttttcacttttgcagcttt--ttgatttttattctc--ctatgacgtccacctaatcta---gtttcattaactgagga

upper sequence: GLYMA04G36790.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ21486 (Selaginella moellendorffii), 5'ss of exon 1
TCTGCGTCTACTGCCCCGGGGGACCTGACTCCGATTTCGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGgtagggtttatgttagttttgtcttctgtgttagggtaaatggaactgattttaagagtgaatagttgagtcaaattaatccctatattctgttgatttt
|||| ||||||||||| || || || || || || ||||| || || || ||||| |||||||| || |||||||| |||||||| |||||||| || |||||   | |||  |  ||||   |||| | || |    |    ||   | || |                                              
TCTGTGTCTACTGCCCGGGAGGCCCAGATTCGGACTTCGAATATAGCACACAGTCCTACACTGGGTATGAACCAACGAGCATGCGAGCAATTCGAGCAAGgtaaattctatagtctttttcatttctttttttg--ctagcaaaaaaaaattcag---------------------------------------------

upper sequence: GLYMA04G36790.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ27078 (Selaginella moellendorffii), 5'ss of exon 1
TCTGCGTCTACTGCCCCGGGGGACCTGACTCCGATTTCGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGgtagggtttatgttagttttgtcttctgtgttagggtaaatggaactgattttaagagtgaatagttgagtcaaattaatccctatattctgttgatttt
|||| ||||||||||| || || || || || || ||||| || || || ||||| |||||||| || |||||||| |||||||| |||||||| || |||||   | |||  |  ||||   |||| | || |    |    ||   |  | |                                              
TCTGTGTCTACTGCCCGGGAGGCCCAGATTCGGACTTCGAATATAGCACACAGTCCTACACTGGGTATGAACCAACGAGCATGCGAGCAATTCGAGCAAGgtaaattctatagtctttttcatttctttttttg--ctagcaaaaaaaaaatcag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323444|gb|GR840141.1|GR840141
EST:     CAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAG                         GTATAATCCATATGTCCAAGCGAGGAGCAGGATAGATCAGCTTAAGCGTTT
genomic: CAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGgtagggttta ... ctggatttagGTATAATCCATATGTCCAAGCGAGGAGCAGGATAGATCAGCTTAAGCGTTT
EST: gi|24136536|gb|BU927046.1|BU927046
EST:     CAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAG                         GTATAATCCATATGTCCAAGCGAGGAGCAGGATAGATCAGCTTAAGCGTTT
genomic: CAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGgtagggttta ... ctggatttagGTATAATCCATATGTCCAAGCGAGGAGCAGGATAGATCAGCTTAAGCGTTT
EST: gi|192304707|gb|FG994971.1|FG994971
EST:     CAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAG                         GTATAATCCATATGTCCAAGCGAGGAGCAGGATAGATCAGCTTAAGCGTTT
genomic: CAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGgtagggttta ... ctggatttagGTATAATCCATATGTCCAAGCGAGGAGCAGGATAGATCAGCTTAAGCGTTT
EST: gi|254340540|gb|GR850842.1|GR850842
EST:     CAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAG                         GTATAATCCATATGTCCAAGCGAGGAGCAGGATAGATCAGCTTAAGCGTTT
genomic: CAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGgtagggttta ... ctggatttagGTATAATCCATATGTCCAAGCGAGGAGCAGGATAGATCAGCTTAAGCGTTT