Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccgcattattggtctttgtgtgaaatccgagtgtgatcttgttgattttttttcctctgtgaaatgtttagtgtttgattggtgagatttttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCAAGTGCTGCAAATGCTATTGTTTAAGCTGGGTTTTTAGTTTA

Basic information

species Glycine max
transcript GLYMA03G32380.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32380.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0049g01790.t01 (Vitis vinifera), 3'ss of exon 3
-ccgcattattggtctttgtgtgaaatccgagtgtgatcttgttg-attttttttcctctgtgaaatgtttagtgtttgattggtgagatttttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCAAGTGCTGCAAATGCTATTGTTTAAGCTGGGTTTTTAGTTTA
  |  |   || ||  |   |  || |  |  |      || |   |||     |     || ||   |||  | | || ||| |||  |  | | || ||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || || |||||||| ||||||||||     |  |||   ||
atcctacc-tttgtggtaaagaaaattttgcatacataattatgatattggaaatggatggttaatatttttctttctggttgttgat-tggtgatttttagGTTCGGCTATTACTGGTCCAATTGGTAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCCAGCGCAGCAAATGCCATTGTTTAAGAACTTTAATTACCGTA

upper sequence: GLYMA03G32380.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S73_232V6.1 (Physcomitrella patens), 3'ss of exon 3
----------------------ccgcatt---attggtctttgtg--tgaaatccg-agtgtgatcttgttgattttttttcctctgtgaaatgtttagtgtttgattggtgagattt--ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCAAGTGCTGCAAATGCTATTGTTT-AAGCTGGGTTTTTAGTTTA
                        | | |   | |  ||||||||  ||  ||| | ||  | | |  |  || ||  | |  ||    | || ||       ||    |||   | |  ||  ||| ||| || ||||| ||||| || ||||||||||| || || ||| |||||||||||||||| ||||| || || || ||||||| ||| |    ||  ||  | 
gtaatttattactatcacgtcgttggactcaaactattctttgtgaatgggatcggcagcataagc--ggcgagttgatgttttcatgaatatattcctgacctgtcgagtgccctctggttttttgcagGGTCCGCTATTACTGGACCAATTGGGAAGGAATGCGCAGATTTGTGGCCCAGGATTGCTAGTGCCGCCAACGCCATTGTTTGAAGGTTTACTTCGAGAGT-

upper sequence: GLYMA03G32380.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S280_69V6.1 (Physcomitrella patens), 3'ss of exon 3
------------------------------------------------------------------------------ccgcat-tattggtctttgtgtgaaatccgagt-gtgatcttgttgattttttttcctctgtgaaatgtttagtgtttgattggtgagatttttaa------ttgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCAAGTGCTGCAAATGCTATTGTTTAAGCTGGGTTTTTAGTTTA
                                                                                |||  |||  ||| | || ||   | |   | |  || ||||  |  || |  | | || ||   |  || || || | || |  | |||||        ||| |||||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||| |||||||| ||||| ||||| | ||     |  ||    ||
gtacgcagatatttccctcaaatatctttgacgtcagattcgttttagcaaaagatccagttagcgaatgagaatgattggcagatatatgtcatcgtatgttgttcttatcggaatgttgtgcacgttatgacttttgggatgagcctactgatttactgataggttttttggcaacttttgcagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGCGCCGATTTGTGGCCTAGGATTGCTAGTGCTGCCAATGCCATTGTCTGAGGGCAATAGTTGTAATA

upper sequence: GLYMA03G32380.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S16_112V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------------------------------------------ccgcattattggtctttgtgtgaaatccgagtgtgatcttg---ttgattt-tttttcctctgtgaaatgtttagtgtttgattggtgagatttt----------taattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCAAGTGCTGCAAATGCTATTGTTTAAGCTGGGTTTT-TAGTTTA
                                                      |  ||||||  | |   |   |  |    |     ||||    | | ||| |||||  | | |  | | |||| | |||  ||      |||||          |   |  ||||||||| || || ||||| ||||| ||||| || || ||| ||||||||||||| || |||||||| || || ||||||| ||     |      | || 
gtgagtgctctagtccttttggttcatagattgtgaatgtgtatctcgattcgtcatattatttatttgcataaaagctgaaggcacactcttaaactcggtttattttttatttttttattttttattttttttttaacttaattttgttctttttgtgtcttcagGTTCTGCCATTACAGGTCCAATTGGAAAGGAATGCGCAGATTTGTGGCCCAGGATCGCTAGTGCTGCGAACGCCATTGTTTGAGTGTACTCACGCGGATT-

upper sequence: GLYMA03G32380.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S15_152V6.1 (Physcomitrella patens), 3'ss of exon 3
----------------------------------------------------------------------------ccgcattattggtctttgtg--tgaaatccgagtgtgatctt-gttgattttttttcctctgtgaaat------gtttagtgtttgattgg--tgagatttttaat------tgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCAAGTGCTGCAAATGCTATTGTTTAAGCTGGGTTTTTAGTTTA-
                                                                               | |  ||| | ||   |  |  | ||  | | |  | ||     | | || | |   |||||| |      |  | | |||||||       |  |||||         || ||||||||||||||||||||| ||||| || |||||||| ||  ||||||| |||||||| |||||||| ||||||||||| | || ||   |  | |   | 
gtaatctcacttacatctatttgattttaggaaatacattcagttggtctgttctgtgaaatctgtcttacagtagttacctacttgattttaaagattacagtcatatttttttgttcaaccactcttgtactcatgtgaagttgttgggactggagtttgatcaaaccaatgtttttggcaacttgtgcagGTTCTGCTATCACTGGTCCCATTGGAAAAGAGTGTGCCGACTTGTGGCCTAGGATTGCCAGTGCTGCTAATGCTATTGTATGAG-TGCAATAGTTGCGCAT

upper sequence: GLYMA03G32380.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S62_136V6.1 (Physcomitrella patens), 3'ss of exon 3
----------------------------ccgcattattggtctttgtgtgaaatccgagtgtgatcttgttgattttttttcctctgtgaaatgtt-----tagtgtttgattggtgagatttttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCAAGTGCTGCAAATGCTATTGTTTAAGCTGGGTTTTTAGTTTA
                              ||| | |     || |  ||      | | | |    | | | | |    |     ||| | ||       |  ||   | |  | | | || | |  || ||||||||| |||||||| || || ||||||||||| || ||  ||||||| |||||||| || ||||| || || ||||||| ||  ||   ||| |    
gtgagtgtatgcagccggtgcattgatggtgcagtctgcagattgggatgggcctagggggggggggtatagctgtaaggtggagggtggattggcagagctgatgagggttgtgcgtggttgtaatgtgcagGTTCTGCCATCACTGGACCGATCGGGAAGGAGTGCGCAGACTTGTGGCCGAGGATTGCGAGCGCTGCCAACGCGATTGTTTGAGAGGGTAGTTTGGGAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207760383|gb|GD733580.1|GD733580
EST:     TGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: TGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|21602300|gb|BQ612631.1|BQ612631
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|207825683|gb|GD800978.1|GD800978
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|193624152|gb|FK576090.1|FK576090
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|10252073|gb|BE819832.1|BE819832
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|254335598|gb|GR847126.1|GR847126
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|31469899|gb|CD411927.1|CD411927
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|213611058|gb|DB970985.1|DB970985
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|9563893|gb|BE473402.1|BE473402
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|37994118|gb|CF805864.1|CF805864
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|15285915|gb|BI469806.1|BI469806
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|207804218|gb|GD776271.1|GD776271
EST:     GTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: GTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|208307849|gb|GE104993.1|GE104993
EST:     TGGGGTCATAGTGTAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: TGGGGTCATAGTG-AATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|208316459|gb|GE113569.1|GE113569
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|7041961|gb|AW471855.1|AW471855
EST:     TGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: TGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|10255285|gb|BE823051.1|BE823051
EST:     GTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: GTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|207782233|gb|GD753244.1|GD753244
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCCGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|9899545|gb|BE608513.1|BE608513
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|16343017|gb|BI968612.1|BI968612
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|193675595|gb|FK614793.1|FK614793
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|21601854|gb|BQ612185.1|BQ612185
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|6915744|gb|AW397274.1|AW397274
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|5058325|gb|AI736801.1|AI736801
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|207726337|gb|GD704705.1|GD704705
EST:     CTTCGAAGATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: CTTCGAAGATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|58019874|gb|CX706616.1|CX706616
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|17963435|gb|BM270184.1|BM270184
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|31456450|gb|CD398478.1|CD398478
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|6913728|gb|AW395258.1|AW395258
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|193541395|gb|FK499133.1|FK499133
EST:     GTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCAATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: GTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|31469507|gb|CD411535.1|CD411535
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|16342874|gb|BI968469.1|BI968469
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|16347846|gb|BI973441.1|BI973441
EST:     ATAATGCTGGGGTCTTATTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|208177848|gb|GD979145.1|GD979145
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|6072943|gb|AW102330.1|AW102330
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|192302455|gb|FG997367.1|FG997367
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTTTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|14990000|gb|BI315673.1|BI315673
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|6727223|gb|AW311577.1|AW311577
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|17021890|gb|BM092924.1|BM092924
EST:     ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
genomic: ATAATGCTGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA
EST: gi|31455785|gb|CD397813.1|CD397813
EST:     TGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAG                         GTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGGGGCCCA
genomic: TGGGGTCATAGTGAATCCCAAGGGTGAAATGAAAGgtatggaata ... ttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttcctctgtgaaatgtttagtgtttgattggtgagatttttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCAAGTGCTGCAAATGCTATTGTTTAAGCTGGGTTTTTAGTTTA
                                           ttttaat  putative branch site (score: 3)
                                          ttttt  CT-rich tract
                                       agatttttaattgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccgcattattggtctttgtgtgaaatccgagtgtgatcttgttgattttttttcctctgtgaaatgtttagtgtttgattggtgagatttttaattgtagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCAAGTGCTGCAAATGCTATTGTTTAAGCTGGGTTTTTAGTTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - tgtgtga
- - - - - - - - - - - - - - gagtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attggtg