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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttaaattttgcatttgatttgattctgagaatcttcagtgatacctgtgcttgtccttgaacagAAAAAAGTCCAGCAAGCTGTTGAATGGCCTATCAAGCATTCTGCTGCATTTTCAAGAATGGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTC

Basic information

species Glycine max
transcript GLYMA02G13160.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G13160.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os05g31220.1 (Oryza sativa), 3'ss of exon 3
-----gtttgttaaattttgcatttgatttgattctgagaatcttcagtgatacctgtgcttgtccttgaacagAAAAAAGTCCAGCAAGCTGTTGAATGGCCTATCAAGCATTCTGCTGCATTTTCAAGAATGGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTC
      | ||    |||||    ||  ||| || |  |    ||| | || |   |||   | | |||   ||||||||| | |||||||||||||||||||| ||||||||| ||||| |||||   ||| | |||||||| ||| | |||||  | ||  | ||||| || |
gtaaaatatgcctcattttaggatttctttaat-caaacctcctttaatggttattgttgctatgctt---cagAAAAAACTTCAGCAAGCTGTTGAATGGCCCATCAAGCATGCTGCTTCATTTGATAGACTTGGAATATCACCTATCCGTGGGGTGCTATTGCATGGTCCAC

upper sequence: GLYMA02G13160.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G149994_T03 (Zea mays), 3'ss of exon 1
gtttgttaaattttgcatttgatttgattctga-gaatcttcagtgatacctgtgcttgtccttgaa---cagAAAAAAGTCCAGCAAGCTGTTGAATGGCCTATCAAGCATTCTGCTGCATTTTCAAGAATGGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTC
||| |  |  | |||  ||||  |   |||||   ||    | ||  |    ||| |||| | ||     |||||| |  | ||| ||| |||||||||||| ||||||||| ||||||||||||| ||| | |||||| | || || || ||  | ||  | ||||| || |
gttaggcatttcttgt-tttggctcccttctggcaaaaaacctgttttgatggtgattgttcatgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTTCTAGACTTGGAATACCACCAGTCCGGGGGGTGCTGTTGCATGGCCCAC

upper sequence: GLYMA02G13160.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G03670.1 (Arabidopsis thaliana), 3'ss of exon 7
------gtttgttaaa--------ttttgcatttgatt---tgattctgagaatcttcagtgatacctgtgcttgtccttgaacagAAAAAAGTCCAGCAAGCTGTTGAATGGCCTATCAAGCATTCTGCTGCATTTTCAAGAATGGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTC
        || |||||        ||||||| ||  ||      || |    ||    | | ||   | |  ||  | |   |||||||||  |||||||||||||||||||||| ||||| ||||| |||||||||  || |||||| ||||| ||  | ||||| || ||||| ||||| ||||
gtcaatactttttaaaaatattcattttgcactttgttgtcctgttttctccattgcgattaatggtttttttttccttgtgacagAAAAAGCTCCAGCAAGCTGTTGAATGGCCAATCAAACATTCAGCTGCATTTGTAAAAATGGGCATATCGCCAATGCGTGGGATACTTCTACATGGTCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatttgatttgattctgagaatcttcagtgatacctgtgcttgtccttgaacagAAAAAAGTCCAGCAAGCTGTTGAATGGCCTATCAAGCATTCTGCTGCATTTTCAAGAATGGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTC
       atttgat  putative branch site (score: 5)
                                        cttgtcctt  putative PPT
       atttgatt  TA-rich tract