1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgtagattctgtttttttgccccctactttctatttacattaatatttctagagctgttttcaacataattggctttattaatgtgcagACCCTGAGTTTTTGAAGGATGTGAGAAGGTATAGCAGACAGGAGCTTGAAGTTGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGATAGTGT
species | Glycine max |
transcript | GLYMA01G42770.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCCTTGGAAAAAATCTGGAAGCCAAAAAGATCATACAGCAGTATATATAG ACCCTGAGTTTTTGAAGGATGTGAGAAGGTATAGCAGACAGGAGCTTGAAGEST: gi|33390196|gb|CA853403.1|CA853403
genomic: TCCTTGGAAAAAATCTGGAAGCCAAAAAGATCATACAGCAGTATATATAGgtatgtagat ... taatgtgcagACCCTGAGTTTTTGAAGGATGTGAGAAGGTATAGCAGACAGGAGCTTGAAG
EST: TCCTTGGAAAAAATCTGGAAGCCAAAAAGATCATACAGCAGTATATATAG ACCCTGAGTTTTTGAAGGATGTGAGAAGGTATAGCAGACAGGAGCTTGAAGEST: gi|19269154|gb|BM885410.1|BM885410
genomic: TCCTTGGAAAAAATCTGGAAGCCAAAAAGATCATACAGCAGTATATATAGgtatgtagat ... taatgtgcagACCCTGAGTTTTTGAAGGATGTGAGAAGGTATAGCAGACAGGAGCTTGAAG
EST: TCCTTGGAAAAAATCTGGAAGCCAAAAAGATCATACAGCAGTATATATAG ACCCTGAGTTTTTGAAGGATGTGAGAAGGTATAGCAGACAGGAGCTTGAAG
genomic: TCCTTGGAAAAAATCTGGAAGCCAAAAAGATCATACAGCAGTATATATAGgtatgtagat ... taatgtgcagACCCTGAGTTTTTGAAGGATGTGAGAAGGTATAGCAGACAGGAGCTTGAAG
ttacattaatatttctagagctgttttcaacataattggctttattaatgtgcagACCCTGAGTTTTTGAAGGATGTGAGAAGGTATAGCAGACAGGAGCTTGAAGTTGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGATAGTGT
tattaat putative branch site (score: 2)
ctttatt CT-rich tract
ttaatatttctaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtagattctgtttttttgccccctactttctatttacattaatatttctagagctgttttcaacataattggctttattaatgtgcagACCCTGAGTTTTTGAAGGATGTGAGAAGGTATAGCAGACAGGAGCTTGAAGTTGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGATAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA