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gtaaatctctttttactctctccatcagtcctcctcctatttttcttatgtgcatgtaggcagtggtcaaggtttttttattttattttgaattctgtttgaaaataactaagtcttttatttgctctggttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
species | Glycine max |
transcript | GLYMA0048S00290.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACT GTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGEST: gi|298172509|gb|HO019549.1|HO019549
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
EST: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACT GTGTTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGEST: gi|151410851|gb|EV280666.1|EV280666
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
EST: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACT GTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGEST: gi|192323250|gb|FK018961.1|FK018961
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
EST: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACT GTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGEST: gi|298178347|gb|HO024082.1|HO024082
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
EST: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACT GTGCTTTGTGTCCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGEST: gi|16345163|gb|BI970758.1|BI970758
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
EST: GTACAGATGTTTTTGACTATCTTACTCTTNNTGCAATTATAGATGGAACT GTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGEST: gi|192296025|gb|FG989419.1|FG989419
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
EST: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAGTTATAGATGGAACT GTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGEST: gi|298187406|gb|HO034555.1|HO034555
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
EST: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACT GTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCEST: gi|254340657|gb|GR854385.1|GR854385
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTC
EST: GTACAGATG-TTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACT GTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGEST: gi|193307179|gb|FK271075.1|FK271075
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
EST: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACT GTGCTTTGTGTTCATGGTGGEST: gi|298190555|gb|HO032676.1|HO032676
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGG
EST: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACT GTGCTTTGTGTTCATGGTGGCCTTTEST: gi|254340656|gb|GR854384.1|GR854384
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTT
EST: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACT GTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
attttgaattctgtttgaaaataactaagtcttttatttgctctggttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
aaataac putative branch site (score: 2)
ttcactt putative PPT
aaaataactaagtctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatctctttttactctctccatcagtcctcctcctatttttcttatgtgcatgtaggcagtggtcaaggtttttttattttattttgaattctgtttgaaaataactaagtcttttatttgctctggttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA