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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACACACATAAACTTCCCGgtatgtttcaattcaggtggcatttctggcttataatattgtacttctccttggagtcccattttctctttctatttggcag

Basic information

species Glycine max
transcript GLYMA0041S00200.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0041S00200.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
GTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACACACATAAACTTCCCGgtatgtt-tcaattcaggtggcatttctggct-tataa-tattgt-actt--ctccttgg--agtcccattttctctttctatttggcag-----------
|||| ||||| ||||| |||||||| || || || ||||| || ||||| |||||||||||||| ||||| |||||||| ||||||||||||  |  ||||||||  |   |||| ||  | | ||| || ||| | ||   |  ||||  | |   ||  | |   |  || ||   |           
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaatcaattcaattaaaatttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag

upper sequence: GLYMA0041S00200.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g56050.1 (Oryza sativa), 5'ss of exon 4
GTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACACACATAAACTTCCCGgtatgtttcaattcaggtggcatttctggcttataatattgtacttctccttggagtcccatttt-ctctttctatttggcag------------------------------------------------------------------------------------------
|||| ||||| ||||| ||||| ||||| ||||| ||||||||||| || |||||||| ||||| ||||| || ||||| |||||||||||        ||| |  |  ||  ||||  |  |    ||||   | | |||| |  |  |   | | | || || ||   |                                                                                           
GTGGGTATGACATGGAGGAGAAGGCTGCCAGGGCGTATGATCTTGCTGCGCTCAAGTACTGGGGCCCTTCCACGCACATCAACTTCCCGgtg-------attaaattaccaactctgattagttcatttgttgcttttcttgcaagcaaacagtacacattttagtttagattttagagtgctagctcaagggcactgtgaatgactgtagttatgatgttacggctatcattgacgtttgttttcaccattttctgggcag

upper sequence: GLYMA0041S00200.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G146688_T01 (Zea mays), 5'ss of exon 5
GTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACACACATAAACTTCCCGgtatgtttcaattcaggtggcatttctggcttataatattgtacttctccttggagtcccattttctct----ttctatttggcag--------------------------
| || || || ||||| ||||| || || ||||| || || || ||||| |||||||| ||||| ||||| || ||||| ||||||||||||      ||||    |     || ||  |||   |  || | |  |  |   | ||| |   |  ||    |  || |  || |                          
GCGGGTACGACATGGAGGAGAAGGCGGCGAGGGCCTACGACCTGGCGGCGCTCAAGTACTGGGGCCCTTCCACGCACATCAACTTCCCGgtaa----taattttttttttgcttttgttttaccgtggtgca-tcatggtaaaaatcctaccattgctgcgctgatactgtgctgcgtgtgtgcctgcaacctgaatgaag

upper sequence: GLYMA0041S00200.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G37750.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACACACATAAACTTCCCGgtatgt--ttcaattcaggtggcatttctggcttataatattgtacttctccttggagtcccattttctctttctatttggcag
| |||||||||||||| |||||||||||  | || ||||||||||| || |||||||| ||||| || || || ||||  || ||| | |||  |  |    |  |      || |||   | |   | |||||    |  ||    |   ||  |   |   ||||||    
GAGGTTATGATATGGAGGAGAAAGCTGCTCGAGCATATGATCTTGCTGCACTCAAGTACTGGGGTCCCTCTACTCACACCAATTTCTCTgtaaatcatcttttctaaactttatgtctctttgaccttgttgtatgatttatttatataatatgataa-tggatatttgaag-

upper sequence: GLYMA0041S00200.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g08610.t01 (Vitis vinifera), 5'ss of exon 5
GTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACACACATAAACTTCCCGgtatgtttcaattcaggtggcatttctggcttataatattgtacttctccttggagtcccattttctctttctatttggcag
| || |||||||||||||||||||||||||| ||||| ||||| ||||| ||||| || ||||||||||| || || || |||||||||||||| |||||  | ||    || |||   |   | |  ||   |      |  |  | || ||  |||     || | |||
GGGGGTATGATATGGAAGAGAAAGCTGCAAGAGCTTACGATCTGGCGGCCCTCAAATACTGGGGACCTTCTACTCATATCAACTTCCCGgtatgattcaacactggattaatctctcaatc-cattggtgacttaaattcttaaaacgcaattcttctgctctttggacag

upper sequence: GLYMA0041S00200.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ26861 (Selaginella moellendorffii), 5'ss of exon 4
GTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACACACATAAACTTCCCGgtatgtttcaattcaggtggcatttctggcttataatattgtacttctccttggagtcccattttctctttctatttggcag
| |||||||| |  ||||||||||| ||  | || |||||||| ||||| |||||||||||||||||| | ||   ||| ||||| || ||| | |||  |||   | | |||      | || |  |   |   |    || |  |    |||   ||   ||  |    
GGGGTTATGACAAAGAAGAGAAAGCAGCGCGAGCGTATGATCTGGCGGCGCTCAAGTATTGGGGACCTACGACCACCATCAACTTTCCTgtaagattcc-ttcctcttgtatt----attcatgaactcacaagaccgtgtgtaaactacgttttggttggcatcag----

upper sequence: GLYMA0041S00200.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ21317 (Selaginella moellendorffii), 5'ss of exon 4
GTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACACACATAAACTTCCCGgtatgtttcaattcaggtggcatttctggcttataatattgtacttctccttggagtcccattttctctttctatttggcag
| |||||||| | |||||||||||| ||  | || |||||||| ||||| |||||||||||||||||| | ||   ||| ||||| || ||  | |||  |||   | | |||      | || |  |   |   |    || |  |    |||   ||   ||  |    
GGGGTTATGACAAGGAAGAGAAAGCAGCGCGAGCGTATGATCTGGCGGCGCTCAAGTATTGGGGACCTACGACCACCATCAACTTTCCTgtgagattcc-ttcctcttgtatt----attcatgaactcacaagaccgtgtgtaaactacgttttgattggcatcag----