1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gatcaaatggactcattatttctcgcttaagttcttatgttgcaattcaactttcattttcttttattcctaagaactcagcgctacttattatgtgcagGGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAGGTAGCCCCAAAATTCCTATGGGAAGTGGAATCACAAATGTTAGAGAACA
species | Glycine max |
transcript | GLYMA0024S00260.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTG GGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAGEST: gi|17963977|gb|BM270719.1|BM270719
genomic: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTGgtaatcactt ... ttatgtgcagGGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAG
EST: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTG GGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAGEST: gi|13312620|gb|BG406271.1|BG406271
genomic: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTGgtaatcactt ... ttatgtgcagGGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAG
EST: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTG GGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAGEST: gi|5819978|gb|AI988115.1|AI988115
genomic: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTGgtaatcactt ... ttatgtgcagGGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAG
EST: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGNCATTG NGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAGEST: gi|51335142|gb|CO979008.1|CO979008
genomic: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTGgtaatcactt ... ttatgtgcagGGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAG
EST: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTG GGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAGEST: gi|193692900|gb|FK628481.1|FK628481
genomic: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTGgtaatcactt ... ttatgtgcagGGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAG
EST: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTG GGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAGEST: gi|13789055|gb|BG651646.1|BG651646
genomic: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTGgtaatcactt ... ttatgtgcagGGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAG
EST: ATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTG GGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAGEST: gi|193552644|gb|FK506167.1|FK506167
genomic: ATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTGgtaatcactt ... ttatgtgcagGGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAG
EST: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTG GGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATACCTAAG
genomic: GTTTATTGGAGGACATCATGCTGGAGATGGATCGACTAATACGGCCATTGgtaatcactt ... ttatgtgcagGGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAAT-CCTA-G
ttcaactttcattttcttttattcctaagaactcagcgctacttattatgtgcagGGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAGGTAGCCCCAAAATTCCTATGGGAAGTGGAATCACAAATGTTAGAGAACA
tttcattttcttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcaaatggactcattatttctcgcttaagttcttatgttgcaattcaactttcattttcttttattcctaagaactcagcgctacttattatgtgcagGGATTTATTATCATTAGGGACGAGGAAGATATTACCTCTAGAATCCTAGAGGTAGCCCCAAAATTCCTATGGGAAGTGGAATCACAAATGTTAGAGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctactt