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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCCATCTTCACTCTCAGTCTCACTCACTCACCATTCACCATTGCCCTTTGCGTCGCTCTAAGCAACACGTCCTTTTCGATCCACATATTCCAGTGTGgtacgctgttttttcccccaaaagccgcatctttattttatttgtctttttattctcattaattagctattctgggattcggagggatgatgggtttgga...

Basic information

species Glycine max
transcript GLYMA0024S00230.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395791|gb|EV265668.1|EV265668
EST:     TTGCGTCGCTCTAAGCAACACGTCCTTTTCGATCCACATATTCCAGTGTG                         TATATAAGTCATCATGCTGTTGTGACAGTTAAAGATAGTGTGGTGTGGAGA
genomic: TTGCGTCGCTCTAAGCAACACGTCCTTTTCGATCCACATATTCCAGTGTGgtacgctgtt ... tcttttgcagTATATAAGTCATCATGCTGTTGTGACAGTTAAAGATAGTGTGGTGTGGAGA
EST: gi|193340166|gb|FK307787.1|FK307787
EST:     TTGCGTCGCTCTAAGCAACACGTCCTTTTCGATCCACATATTCCAGTGTG                         TATATAAGTCATCATGCTGTTGTGACAGTTAAAGATAGTGTGGTGTGGAGA
genomic: TTGCGTCGCTCTAAGCAACACGTCCTTTTCGATCCACATATTCCAGTGTGgtacgctgtt ... tcttttgcagTATATAAGTCATCATGCTGTTGTGACAGTTAAAGATAGTGTGGTGTGGAGA
EST: gi|8285593|gb|BE023152.1|BE023152
EST:     TTGCGTCGCTCTAAGCAACACGTCCTTTTCGATCCACATATTCCAGTGTG                         TATATAAGTCATCATGCTGTTGTGACAGTTAAAGATAGTGTGGTGTGGAGA
genomic: TTGCGTCGCTCTAAGCAACACGTCCTTTTCGATCCACATATTCCAGTGTGgtacgctgtt ... tcttttgcagTATATAAGTCATCATGCTGTTGTGACAGTTAAAGATAGTGTGGTGTGGAGA
EST: gi|192303859|gb|FG998211.1|FG998211
EST:     TTGCGTCGCTCTAAGCAACACGTCCTTTTCGATCCACATATTCCAGTGTG                         TATATAAGTCATCATGCTGTTGTGACAGTTAAAGATAGTGTGGTGTGGAGA
genomic: TTGCGTCGCTCTAAGCAACACGTCCTTTTCGATCCACATATTCCAGTGTGgtacgctgtt ... tcttttgcagTATATAAGTCATCATGCTGTTGTGACAGTTAAAGATAGTGTGGTGTGGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCCATCTTCACTCTCAGTCTCACTCACTCACCATTCACCATTGCCCTTTGCGTCGCTCTAAGCAACACGTCCTTTTCGATCCACATATTCCAGTGTGgtacgctgttttttcccccaaaagccgcatctttattttatttgtctttttattctcattaattagctattctgggattcggagggatgatgggtttgga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccccc