1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcgcgggctcggccaaaaccgtgatatgtgccatcgcgctcaagtacagggataaccacgctaaacgcctaccacgcgtacgcctcctatgctgcggcagAGGCGACTTACACCAGCAGATTACATCGTGACGAAAACGCAAAGGTCCTTGGCTTCGTTCCTGCATTGA
species | Chlamydomonas reinhardtii |
transcript | EDP10012 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
acagggataaccacgctaaacgcctaccacgcgtacgcctcctatgctgcggcagAGGCGACTTACACCAGCAGATTACATCGTGACGAAAACGCAAAGGTCCTTGGCTTCGTTCCTGCATTGA
cgctaaa putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgcgggctcggccaaaaccgtgatatgtgccatcgcgctcaagtacagggataaccacgctaaacgcctaccacgcgtacgcctcctatgctgcggcagAGGCGACTTACACCAGCAGATTACATCGTGACGAAAACGCAAAGGTCCTTGGCTTCGTTCCTGCATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - ccaaaac
- - - - - - - - - - - - tatgtgc
- - - - - - - - - - - - - - - - - - - - -aagtaca
- - - - - - - - - - - - - - - - - - - - - - - - - -ataacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgcgta