Sequence
atgc intronic sequence ATGC exonic sequenceGCGGAGAACTTCCGTGCCCTGTGCACCGGCGAGAAGGGCGTGGGCGAGAAGGGCAAGCCGCTGCACTACAAGGGGTCCACGTTCCACCGCGTCATCCCAGgtgtgtggagcacaggggagagccctctcggcgccgggaggacgtggtgacaggtgtgggcaaacagccccaagtggtcgggagggcaggagtgggagtg...
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP09953 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EDP09953 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: LOC_Os02g52360.1 (Oryza sativa), 5'ss of exon 1
-------------------------GCGGAGAACTTCCGTGCCCTGTGCACCGGCGAGAAGGGCGTGGGCGA---GAAGGGCAAGCCGCTGCACTACAAGGGGTCCACGTTCCACCGCGTCATCCCAGgtgtgtggagcacaggggagagccctctcggcgccgggaggacgtggtgacaggtgtgggcaaacagccccaagtggtcgggagggcaggagtgggagtg
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CTACGCCTCCGTGGCCCCTCGCACGGCGGAGAACTTCCGCGCGCTCTGCACCGGCGAGAAGGGCGTCAGCGCCGCCACCGGCGTGCCGCTTCACTACAAGgttt----gtcctggtttggcggtcc----gtgtgctaccc---gtagtttttcctggttgcagccttggagggtcgacgcgtgagaggatgccggctgcggtgcgattga-----------------
upper sequence: EDP09953 (Chlamydomonas reinhardtii), 5'ss of exon 3
lower sequence: LOC_Os06g11320.1 (Oryza sativa), 5'ss of exon 1
-------------------------GCGGAGAACTTCCGTGCCCTGTGCACCGGCGAGAAGGGCGTGGGCGA---GAAGGGCAAGCCGCTGCACTACAAGGGGTCCACGTTCCACCGCGTCATCCCAGgtgtgtggagcacaggggagagccctctcggcgccgggaggacgtggtgacaggtgtgggcaaacagccccaagtggtcgggagggcaggagtgggagtg
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CTACGCGTCGGTGGTGCCGCGGACGGCGGAGAACTTCCGCGCGCTCTGCACCGGGGAGAAGGGCGTCGGCGCCGTCACCGGGAAGCACCTACACTACAAGgtgagtacgga--accgccgatttggagccatc----gccgaggccgagatgcttgtggcgtccgg-----gtagtccctttcg-gggctttctgcc----gtggt--ggaggtttag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10790944|gb|AV628310.1|AV628310EST: GGGCAAGCCGCTGCACTACAAGGGGTCCACGTTCCACCGCGTCATCCCAG ACTTCATGATCCAGGGCGGCGACTTCACCAACGGCGACGGCCGCGGCGGCG
genomic: GGGCAAGCCGCTGCACTACAAGGGGTCCACGTTCCACCGCGTCATCCCAGgtgtgtggag ... cgccgcccagACTTCATGATCCAGGGCGGCGACTTCACCAACGGCGACGGCCGCGGCGGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGGAGAACTTCCGTGCCCTGTGCACCGGCGAGAAGGGCGTGGGCGAGAAGGGCAAGCCGCTGCACTACAAGGGGTCCACGTTCCACCGCGTCATCCCAGgtgtgtggagcacaggggagagccctctcggcgccgggaggacgtggtgacaggtgtgggcaaacagccccaagtggtcgggagggcaggagtgggagtg
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