1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcatatgcacactgacacacaggtcagacgtcaccacacaagcacgcctaatatctatccccccacatatccttgtggttttcaaacacaccacgcacagGCCGAGGTGCGCGGCGACGTGGAGGCCCTGCGGCAGCACGTGGACGCCTACGTCACACAGCGCGAGCGCCGCGCCTTCGAGCTGGAGCGCAGCGCCATGC
species | Chlamydomonas reinhardtii |
transcript | EDP09949 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gcctaatatctatccccccacatatccttgtggttttcaaacacaccacgcacagGCCGAGGTGCGCGGCGACGTGGAGGCCCTGCGGCAGCACGTGGACGCCTACGTCACACAGCGCGAGCGCCGCGCCTTCGAGCTGGAGCGCAGCGCCATGC
gcctaat putative branch site (score: 3)
atatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatatgcacactgacacacaggtcagacgtcaccacacaagcacgcctaatatctatccccccacatatccttgtggttttcaaacacaccacgcacagGCCGAGGTGCGCGGCGACGTGGAGGCCCTGCGGCAGCACGTGGACGCCTACGTCACACAGCGCGAGCGCCGCGCCTTCGAGCTGGAGCGCAGCGCCATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - atgcaca
- - - - - - - acacaca
- - - - - - - - - - - -tcagacg
- - - - - - - - - - - - - - - - -ccacaca
- - - - - - - - - - - - - - - - - - - - - -acgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaca