Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14233272|gb|BG852088.1|BG852088EST: AGATGGCGAACGGAGCTCTCCCAGCGGCGGAAACCAAATCACTCTCGAAC GCTTCAACACGCCTACGCGGAACGTGTTGAAGAAGTTTGATGACAACGGGG
genomic: AGATGGCGAACGGAGCTCTCCCAGCGGCGGAAACCAAATCACTCTCGAACgtaggttcat ... acactttcagGCTTCAACACGCCTACGCGGAACGTGTTGAAGAAGTTTGATGACAACGGGG
EST:
gi|15370364|gb|BI529790.1|BI529790EST: AGATGGNGAACGGAGCTCTCCCAGCGGGGGAAACCAAATCACTGTGGAAC GCTTGAACACGCCTA
genomic: AGATGGCGAACGGAGCTCTCCCAGCGGCGGAAACCAAATCACTCTCGAACgtaggttcat ... acactttcagGCTTCAACACGCCTA
EST:
gi|14233273|gb|BG852089.1|BG852089EST: AGATGGCGAACGGAGCTCTCCCAGCGGCGGAAACCAAATCACTCTCGAAC GCTTCAACACGCCTACGCGGAACGTGTTGAAGAAGTTTGATGACAACGGGG
genomic: AGATGGCGAACGGAGCTCTCCCAGCGGCGGAAACCAAATCACTCTCGAACgtaggttcat ... acactttcagGCTTCAACACGCCTACGCGGAACGTGTTGAAGAAGTTTGATGACAACGGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcacccgctaaactcctgcctgtcttggttcccgtgctcggttccacactttcagGCTTCAACACGCCTACGCGGAACGTGTTGAAGAAGTTTGATGACAACGGGG
cgctaaa putative branch site (score: 3)
cactttc putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggttcatgcgcaagttcgcaaatgctagtggatggtaccgcttcggcaccgtcgttcccattgcgcgcttcaacacctgaatgccttgggattacgccgtccagctcgccgcttaccatttgcgcacccgctaaactcctgcctgtcttggttcccgtgctcggttccacactttcagGCTTCAACACGCCTACGCGGAACGTGTTGAAGAAGTTTGATGACAACGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT