1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtagggaacccgtgctggcaaggcaaaggcaggaagggcagcggcggcgggcggtggtgcacaaggggtgcaaagcggaccgccatgcgatttacggcacaccacgcgctcgcgtgcccaccacacgtgtgtgcagTGTGTCAGACGCTGGCGGACCAGGGCATCGAGGTCACCACCTACGATGCGCACGGGCACGGCAAGTCGGAGCCAACGGAGGAGGGCGGCCGCGCCTTCGT
species | Chlamydomonas reinhardtii |
transcript | EDP09761 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCTTCATCCACCACGGTCTCGCGGAGCACTGCGGCCGCTATGACAACG TGTGTCAGACGCTGGCGGACCAGGGCATCGAGGTCACCACCTACGATGCGCEST: gi|14225075|gb|BG843891.1|BG843891
genomic: GCTCTTCATCCACCACGGTCTCGCGGAGCACTGCGGCCGCTATGACAACGgtagggaacc ... gtgtgtgcagTGTGTCAGACGCTGGCGGACCAGGGCATCGAGGTCACCACCTACGATGCGC
EST: GCTCTTCATCCACCACGGTCTCGCGGAGCACTGCGGCCGCTATGACAACG TGTGTCAGACGCTGGCGGACCAGGGCATCGAGGTCACCACCTACGATGCGC
genomic: GCTCTTCATCCACCACGGTCTCGCGGAGCACTGCGGCCGCTATGACAACGgtagggaacc ... gtgtgtgcagTGTGTCAGACGCTGGCGGACCAGGGCATCGAGGTCACCACCTACGATGCGC
gccatgcgatttacggcacaccacgcgctcgcgtgcccaccacacgtgtgtgcagTGTGTCAGACGCTGGCGGACCAGGGCATCGAGGTCACCACCTACGATGCGCACGGGCACGGCAAGTCGGAGCCAACGGAGGAGGGCGGCCGCGCCTTCGT
attta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagggaacccgtgctggcaaggcaaaggcaggaagggcagcggcggcgggcggtggtgcacaaggggtgcaaagcggaccgccatgcgatttacggcacaccacgcgctcgcgtgcccaccacacgtgtgtgcagTGTGTCAGACGCTGGCGGACCAGGGCATCGAGGTCACCACCTACGATGCGCACGGGCACGGCAAGTCGGAGCCAACGGAGGAGGGCGGCCGCGCCTTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG