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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggctgatggggctgggcctccggaagggcggcgcggcgcggcgcggcacggcctgcaccttgcctcttacgcccgtcctgcgcttccgcaccgctgcagGCCGCGTGTCAGCAGATTGGCGGAGTGCGACTGGCGCGGCCGGACGCAGGGATGATGGGCAGCAGCGCCGGAGCCGGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09623
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16431289|gb|BI996499.1|BI996499
EST:     TCTACCTGGTCGACCGCAACGGCCTGCCTCCCGCAGACACCGTTGTGCAG                         GCCGCGTGTCAGCAGATTGGCGGAGTGCGACTGGCGCGGCCGGACGCAGGG
genomic: TCTACCTGGTCGACCGCAACGGCCTGCCTCCCGCAGACACCGTTGTGCAGgtgagcacag ... accgctgcagGCCGCGTGTCAGCAGATTGGCGGAGTGCGACTGGCGCGGCCGGACGCAGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcacggcctgcaccttgcctcttacgcccgtcctgcgcttccgcaccgctgcagGCCGCGTGTCAGCAGATTGGCGGAGTGCGACTGGCGCGGCCGGACGCAGGGATGATGGGCAGCAGCGCCGGAGCCGGG
                   ctcttac  putative branch site (score: 3)