Sequence
atgc intronic sequence ATGC exonic sequence...cgttccttttgctcctgttgctcctgttgatgttgatgttgatgccacatctgacatcctgctcccgaccttcattgccttacccgctgccgccgcccagGATCCAATCGGCCCCGGTCCGAGCTGTGAACCGGCTGGACGCGGTGTTGTCGGCGCTGGTGCACTGCAGCGGCGCCTCCTGCCGCAACCCCTACAGCCTA
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP09615 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacatctgacatcctgctcccgaccttcattgccttacccgctgccgccgcccagGATCCAATCGGCCCCGGTCCGAGCTGTGAACCGGCTGGACGCGGTGTTGTCGGCGCTGGTGCACTGCAGCGGCGCCTCCTGCCGCAACCCCTACAGCCTA
gccttac putative branch site (score: 3)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cgttccttttgctcctgttgctcctgttgatgttgatgttgatgccacatctgacatcctgctcccgaccttcattgccttacccgctgccgccgcccagGATCCAATCGGCCCCGGTCCGAGCTGTGAACCGGCTGGACGCGGTGTTGTCGGCGCTGGTGCACTGCAGCGGCGCCTCCTGCCGCAACCCCTACAGCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - -tgttgct
- - - - - - - - - - - - tgttgat
- - - - - - - - - - - - - ttgatgt
- - - - - - - - - - - - - - - - - - - - - tgccaca
- - - - - - - - - - - - - - - - - - - - - - - - -tctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accttca