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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcggctgaggcatttgcagaaactacaaatacgcctgaagagtgttgatggaacgcgggccgccatgacttggattacatcgcttttcccgtcgcacattctcagctggcaacttcggaatatgcatcacagGACGCGCATAGCGGAAAACATTCCCGGCCGCTCCGGCAAGAGCTGCCGGCTGCGGTGGTTGAACCAGCTAAGCCCAGCGCTCAAGACGAGTCCGTGGGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09593
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP09593 (Chlamydomonas reinhardtii), 3'ss of exon 2
lower sequence: EFJ35755 (Selaginella moellendorffii), 3'ss of exon 1
gtgagcggctgaggcatttgcagaaactacaaatacgcctgaagagtgttgatggaacgcgggccgccatgacttggattacatcgcttttcccgtcgcacattctcagctggcaacttcggaatatgcatcacagGACGCGCATAGCGGAAAACATTCCCGGCCGCTCCGGCAAGAGCTGCCGGCTGCGGTGGTTGAACCAGCTAAGCCCAGCGCTCAAG-ACGAG------TCCGTGGGAG----------------------------
                                                                          || ||  ||  ||| |  |   | |    ||     ||  || |      | |   || ||  |||  ||  |  ||  |  |         | | || ||||||||||||||||| ||||| ||||||||    ||   | ||||   | ||      |||| || ||                            
-------------------------------------------------------------------------gtgaatatcacagctctctcatcctcgtcctcctgtttgaaaaatc-----tgtttttctcaccacggccactgtcgatgatgt---------cgcagGAAAGAGCTGCCGGCTGCGATGGTTCAACCAGCTGGATCCCCGGATCAACCGCAAGCCATTCTCCGAGGAAGAGGAGGAGCGACTGCTCGCCGCGCACCA

upper sequence: EDP09593 (Chlamydomonas reinhardtii), 3'ss of exon 2
lower sequence: EFJ10706 (Selaginella moellendorffii), 3'ss of exon 1
gtgagcggctgaggcatttgcagaaactacaaatacgcctgaagagtgttgatggaacgcgggccgccatgacttggattacatcgcttttcccgtcgcacattctcagctggcaacttcggaatatgcatc-acagGACGCG----CATAGCGGAAAACATTCCCGGCCGCTCCGGCAAGAGCTGCCGGCTGCGGTGGTTGAACCAGCTAAGCCCAGCGCTCAAGACGAGTCCGTGGGAG
                                           || |||  |  |  | |    |  | |      | ||  |   || ||    || |||   | | |  |   |  ||| |  |   | |  | ||  |||       | |       || |||||     |||  |     |  | |  |  | ||  | | |  ||   | | |||| | |                
-----------------------------------------gtgaatgtc-acagctctctcatcctcgtcctcctgtttgaaaatctgttttt-tctcaccaccactgtcgatgatgtcgcagGAAAGAGCTGCCGGCTGCGATGGTTCAACCAGCTGGATCCCCGGATCAACCGCAAGCCATTCTCCGAGGAAGAGGA-GGAGCGACTGCTCGCCGCGCACCA----------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcgcttttcccgtcgcacattctcagctggcaacttcggaatatgcatcacagGACGCGCATAGCGGAAAACATTCCCGGCCGCTCCGGCAAGAGCTGCCGGCTGCGGTGGTTGAACCAGCTAAGCCCAGCGCTCAAGACGAGTCCGTGGGAG
                                         aatat  TA-rich tract