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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggccagacttgagagcacgttgggggatttgcgctggggcaaaaagggctgcaatgcaaaggttgccctgattgtgcgcgcacaccggtaagcaaactaagtccacgcatatggcgctggactgtagGTGGACCCCACGCTCTGGAAGATCGAGCTGGAGCGCGTGGCGCCGAAGCTGCGTATCACCATCGCCGCCGACTCGAAGGACTGGCGCTCACATCTGGATG

Basic information

species Chlamydomonas reinhardtii
transcript EDP08141
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16438339|gb|BM003559.1|BM003559
EST:     CAGGGGCATCCGCGGCGATGGACGCGGAGAAGGCGGTGCTTGTGTCCAAG                         GTGGACCCCACGCTCTGGAAGATCGAGCTGGAGCGCGTGGCGCCGAAGCTG
genomic: CAGGGGCATCCGCGGCGATGGACGCGGAGAAGGCGGTGCTTGTGTCCAAGgtgggccaga ... tggactgtagGTGGACCCCACGCTCTGGAAGATCGAGCTGGAGCGCGTGGCGCCGAAGCTG
EST: gi|10779856|gb|AV636536.1|AV636536
EST:     CAGGGGCATCCGCGGCGATGGACGCGGAGAAGGCGGTGCTTGTGTCCAAG                         GTGGACCCCACGCTCTGGAAGATCGAGCTGGAGCGCGTGGCGCCGAAGCTG
genomic: CAGGGGCATCCGCGGCGATGGACGCGGAGAAGGCGGTGCTTGTGTCCAAGgtgggccaga ... tggactgtagGTGGACCCCACGCTCTGGAAGATCGAGCTGGAGCGCGTGGCGCCGAAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgcgcgcacaccggtaagcaaactaagtccacgcatatggcgctggactgtagGTGGACCCCACGCTCTGGAAGATCGAGCTGGAGCGCGTGGCGCCGAAGCTGCGTATCACCATCGCCGCCGACTCGAAGGACTGGCGCTCACATCTGGATG
                     aaactaa  TA-rich tract