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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTCTACCTGACAGTGGCGTTCATTGAGATGTCGCGTGCATCCATGCCCGTGCTCACCATGTTTGCGCTGTGGGTGACAGgtgggtgcggataacagcaacaaaggcagtgtgttgcgaacgcacaagggaaatgggggagccggccgcagctggtatgggagcaagtgtggccgcgtgtattgtgtcggctgtggtcagcggctgagcacccgaccctgcgtggttgccgccccgcccccccttctcccgccctgtggccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP08020
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22060396|gb|BQ813781.1|BQ813781
EST:     GTCGCGTGCATCCATGCCCGTGCTCACCATGTTTGCGCTGTGGGTGACAG                         GCATGGAGTTCCCCACGCAGCAGGTGGTGGCGGCGGTCAGTGTGGTGGCGG
genomic: GTCGCGTGCATCCATGCCCGTGCTCACCATGTTTGCGCTGTGGGTGACAGgtgggtgcgg ... gtggccgcagGCATGGAGTTCCCCACGCAGCAGGTGGTGGCGGCGGTCAGTGTGGTGGCGG
EST: gi|10784660|gb|AV641332.1|AV641332
EST:     GTCGCGTGCATCCATGCCCGTGCTCACCATGTTTGCGCTGTGGGTGACAG                         GCATGGAGTTCCCCA
genomic: GTCGCGTGCATCCATGCCCGTGCTCACCATGTTTGCGCTGTGGGTGACAGgtgggtgcgg ... gtggccgcagGCATGGAGTTCCCCA