1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCCATCTCCGCGGACCAGGTGCGGAACAATGCGGGAGGCTTCGTATTCAAGGTCGATGACTTAACGCTGCTGCGCCGGTACATCATCCTCGGTTCTGATGgtgagttgtcggctgcagctggccagggtcaggaggcagcggttggcgcttttgcgtgccggtagcgggctggtgacggctcgtgggccatcaacccagc...
species | Chlamydomonas reinhardtii |
transcript | EDP07973 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTCGATGACTTAACGCTGCTGCGCCGGTACATCATCCTCGGTTCTGATG CCAACAACTACTACGTCTCGCGTAAGTCGGTGGACCTGGCGTCTGCCCAGTEST: gi|10790411|gb|AV627777.1|AV627777
genomic: GGTCGATGACTTAACGCTGCTGCGCCGGTACATCATCCTCGGTTCTGATGgtgagttgtc ... ccccctccagCCAACAACTACTACGTCTCGCGTAAGTCGGTGGACCTGGCGTCTGCCCAGT
EST: GGTCGATGACTTAACGCTGCTGCGCCGGTACATCATCCTCGGTTCTGATG CCAACAACTACTACGTC
genomic: GGTCGATGACTTAACGCTGCTGCGCCGGTACATCATCCTCGGTTCTGATGgtgagttgtc ... ccccctccagCCAACAACTACTACGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCATCTCCGCGGACCAGGTGCGGAACAATGCGGGAGGCTTCGTATTCAAGGTCGATGACTTAACGCTGCTGCGCCGGTACATCATCCTCGGTTCTGATGgtgagttgtcggctgcagctggccagggtcaggaggcagcggttggcgcttttgcgtgccggtagcgggctggtgacggctcgtgggccatcaacccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcaac