1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTACAAAGGAGGATGACTACACGCTGTACGAGAGCCTGGGCCGGTATGTGGCCGCAACGGTCCAGCCGCATCTCATCCTGATGAGCAGCAACAACCTGTgtaagtggagtggtccaagtggggggctggaaaagggcggacagtgcttggagagttgcactgcgggccgcgtacaccttacagtaatgggtgcagtttc...
species | Chlamydomonas reinhardtii |
transcript | EDP07951 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGCCGCAACGGTCCAGCCGCATCTCATCCTGATGAGCAGCAACAACCTGT GCGCCAACGCCCAGAACTCCGCTGCCCCCAGCCGCATCAGCCTGTTAGGCGEST: gi|10127502|gb|BE726206.1|BE726206
genomic: GGCCGCAACGGTCCAGCCGCATCTCATCCTGATGAGCAGCAACAACCTGTgtaagtggag ... cctcccgcagGCGCCAACGCCCAGAACTCCGCTGCCCCCAGCCGCATCAGCCTGTTAGGCG
EST: GGCCGCAACGGTCCAGCCGCATCTCATCCTGATGAGCAGCAACAACCTGT GCGCCAACGCCCAGAACTCCGCTGCCCCCAGCCGCATCAGCCTGTTAGGCGEST: gi|23359273|gb|BU647093.1|BU647093
genomic: GGCCGCAACGGTCCAGCCGCATCTCATCCTGATGAGCAGCAACAACCTGTgtaagtggag ... cctcccgcagGCGCCAACGCCCAGAACTCCGCTGCCCCCAGCCGCATCAGCCTGTTAGGCG
EST: GGCCGCGACGGTCCAGCCGCATCTCATCCTGATGAGCAGCAACAACCTGT GCGCCAACGCCCAGAACTCCGCTGCCCCCAGCCGCATCAGCCTGTTAGGCGEST: gi|15703414|gb|BI727719.1|BI727719
genomic: GGCCGCAACGGTCCAGCCGCATCTCATCCTGATGAGCAGCAACAACCTGTgtaagtggag ... cctcccgcagGCGCCAACGCCCAGAACTCCGCTGCCCCCAGCCGCATCAGCCTGTTAGGCG
EST: GGCCGCAACGGTCCAGCCGCATCTCATCCTGATGAGCAGCAACAACCTGT GCGCCAACGCCCAGAACTCCGCTGCCCCCAGCCGCATEST: gi|22073769|gb|BQ823107.1|BQ823107
genomic: GGCCGCAACGGTCCAGCCGCATCTCATCCTGATGAGCAGCAACAACCTGTgtaagtggag ... cctcccgcagGCGCCAACGCCCAGAACTCCGCTGCCCCCAGCCGCAT
EST: GGCCGCAACGGTCCAGCCGCATCTCATCCTGATGAGCAGCAACAACCTGT GCGCCAACGCCCAGAACTCCGCTGCCCCCAGCCGCATCAGCCTGTTAGGCG
genomic: GGCCGCAACGGTCCAGCCGCATCTCATCCTGATGAGCAGCAACAACCTGTgtaagtggag ... cctcccgcagGCGCCAACGCCCAGAACTCCGCTGCCCCCAGCCGCATCAGCCTGTTAGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACAAAGGAGGATGACTACACGCTGTACGAGAGCCTGGGCCGGTATGTGGCCGCAACGGTCCAGCCGCATCTCATCCTGATGAGCAGCAACAACCTGTgtaagtggagtggtccaagtggggggctggaaaagggcggacagtgcttggagagttgcactgcgggccgcgtacaccttacagtaatgggtgcagtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgggt