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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTAACTCCTGGGGTACTCTATCTTGCCCAGCCATCGAGGCCGAGCCGGTGGAGTTGCTGCTGACCTACGTGCCGGGCGGGACCCTCGCCGAGTACCTGgtgagcggcttgcttttgtgcacaagggcggcagggggcatgcagcaggctcccgtgtgatggctgtagatggcaacgtatggagcgcttgggtgcttgg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP07900
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14232972|gb|BG851788.1|BG851788
EST:     TGGAGTTGCTGCTGACCTACGTGCCGGGCGGGACCCTCGCCGAGTACCTG                         GATGACCTGATGAGGGCCAACCAGATGCGCATCTTCCACGGCCCACCTCCC
genomic: TGGAGTTGCTGCTGACCTACGTGCCGGGCGGGACCCTCGCCGAGTACCTGgtgagcggct ... cctcttacagGATGACCTGATGAGGGCCAACCAGATGCGCATCTTCCACGGCCCACCTCCC
EST: gi|15701710|gb|BI726015.1|BI726015
EST:     TGGAGTTGCTGCTGACCTACGTGCCGGGCGGGACCCTCGCCGAGTACCTG                         GATGACCTGATGAGGGCCAACCAGATGCGCATCTTCCACGGCCCACCTCCC
genomic: TGGAGTTGCTGCTGACCTACGTGCCGGGCGGGACCCTCGCCGAGTACCTGgtgagcggct ... cctcttacagGATGACCTGATGAGGGCCAACCAGATGCGCATCTTCCACGGCCCACCTCCC
EST: gi|15692124|gb|BI716429.1|BI716429
EST:     TGGAGTTGCTGCTGACCTACGTGCCGGGCGGGACCCTCGCCGAGTACCTG                         GATGACCTGATGAGGGCCAACCAGATGCGCATCTTCCACGGCCCACCTCCC
genomic: TGGAGTTGCTGCTGACCTACGTGCCGGGCGGGACCCTCGCCGAGTACCTGgtgagcggct ... cctcttacagGATGACCTGATGAGGGCCAACCAGATGCGCATCTTCCACGGCCCACCTCCC
EST: gi|9027678|gb|BE237734.1|BE237734
EST:     TGGAGTTGCTGCTGACCTACGTGCCGGGCGGGACCCTCGCCGAGTACCTG                         GATGACCTGATGAGGGCCAACCAGATGCGCATCTTTCACGGCCCACCTCCC
genomic: TGGAGTTGCTGCTGACCTACGTGCCGGGCGGGACCCTCGCCGAGTACCTGgtgagcggct ... cctcttacagGATGACCTGATGAGGGCCAACCAGATGCGCATCTTCCACGGCCCACCTCCC
EST: gi|15701752|gb|BI726057.1|BI726057
EST:     TGGAGTTGCTGCTGACCTACGTGCCGGGCGGGACCCTCGCCGAGTACCTG                         GATGACCTGATGAGGGCCAACCAGATGCGCATCTTCCACGGCCCACCTCCC
genomic: TGGAGTTGCTGCTGACCTACGTGCCGGGCGGGACCCTCGCCGAGTACCTGgtgagcggct ... cctcttacagGATGACCTGATGAGGGCCAACCAGATGCGCATCTTCCACGGCCCACCTCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTAACTCCTGGGGTACTCTATCTTGCCCAGCCATCGAGGCCGAGCCGGTGGAGTTGCTGCTGACCTACGTGCCGGGCGGGACCCTCGCCGAGTACCTGgtgagcggcttgcttttgtgcacaagggcggcagggggcatgcagcaggctcccgtgtgatggctgtagatggcaacgtatggagcgcttgggtgcttgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtgc