Sequence
atgc intronic sequence ATGC exonic sequence...tatgctccccgcactcaacctgtgtttccctgcctcacactacatttaagctgtataataactcttcccccttctccctgcctcccccaacccttttcagGAGGCCCGGGGCGGCAACCCTGTGTCCATGGCGCTCGTGG
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP06581 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14239891|gb|BG858707.1|BG858707EST: G-CAGGTGGTGGAGGAGGTGCANGACGAGTGGTTTGAAGAG-AGATGGAG GAG-CCCNGGGCGGGCA-CCCTGTGTCCATGGCGCTCGTGG
genomic: GGCAGGTGGTGGAGGAGGTGCAGGACGAGTGGTTTGAAGAGGAGATGGAGgtgaggccgc ... cccttttcagGAGGCCCGGGGCGG-CAACCCTGTGTCCATGGCGCTCGTGG
EST:
gi|14242579|gb|BG861395.1|BG861395EST: GGCAGGTGGTGGAGGAGGTGCAGGACGAGTGGTTTGAAGAGGAGATGGAG GAGGCCCNGGNNGCG-CAACCCTGTGTCCATGGCGCTCGTGG
genomic: GGCAGGTGGTGGAGGAGGTGCAGGACGAGTGGTTTGAAGAGGAGATGGAGgtgaggccgc ... cccttttcagGAGGCCCGGG--GCGGCAACCCTGTGTCCATGGCGCTCGTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaagctgtataataactcttcccccttctccctgcctcccccaacccttttcagGAGGCCCGGGGCGGCAACCCTGTGTCCATGGCGCTCGTGG
taataac putative branch site (score: 1)
ctcttcccccttctcc CT-rich tract
tgtataataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatgctccccgcactcaacctgtgtttccctgcctcacactacatttaagctgtataataactcttcccccttctccctgcctcccccaacccttttcagGAGGCCCGGGGCGGCAACCCTGTGTCCATGGCGCTCGTGG
- - - - - - actcaac
- - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - -ctcacac
- - - - - - - - - - - - - - - - - - - - -acattta
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtataa