Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtcacgagtgagggccagtgggggcccgccagcaccacgccggggcggcgcgggccgggggacgggcgttgctattgggtgtgcacacggttggttgcatgtgcggcgtgcgggttgaagggacgcatctgcatgcgatgacgtaaccgatctggctttatatttgcagGTGTCCATAGTGCAGCCGGTGTCGGCGGTGGGCCTCGTGATTCTGCTCATCTTCTCGCACTTCTATCTAAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06566
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14237617|gb|BG856433.1|BG856433
EST:     TGGACCTGGGCGGGGCGCTGCTCATGATAGTCGCGTTCGCCAACGCCCCG                         GTGTCCATAGTGCAGCCGGTGTCGGCGGTGGGCCTCGTGATTCTGCTCATC
genomic: TGGACCTGGGCGGGGCGCTGCTCATGATAGTCGCGTTCGCCAACGCCCCGgtgagtgtca ... atatttgcagGTGTCCATAGTGCAGCCGGTGTCGGCGGTGGGCCTCGTGATTCTGCTCATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaagggacgcatctgcatgcgatgacgtaaccgatctggctttatatttgcagGTGTCCATAGTGCAGCCGGTGTCGGCGGTGGGCCTCGTGATTCTGCTCATCTTCTCGCACTTCTATCTAAAG
                          acgtaac  putative branch site (score: 3)
                                          tttatattt  TA-rich tract