Sequence
atgc intronic sequence ATGC exonic sequence...cgcagttgcaggttacctgtgcctgtaggcggcctgctctgagtggttgtgcgcatgaacacgaacagttgaccgcaacacatctgcttactaactgcagGACCACTTCATCTTCCGCGTGGAGGGCACGGGCGTGCTGGAGGTCAAGAGCATTGTG
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP06565 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgtgcgcatgaacacgaacagttgaccgcaacacatctgcttactaactgcagGACCACTTCATCTTCCGCGTGGAGGGCACGGGCGTGCTGGAGGTCAAGAGCATTGTG
tactaac putative branch site (score: 0)
ttactaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cgcagttgcaggttacctgtgcctgtaggcggcctgctctgagtggttgtgcgcatgaacacgaacagttgaccgcaacacatctgcttactaactgcagGACCACTTCATCTTCCGCGTGGAGGGCACGGGCGTGCTGGAGGTCAAGAGCATTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - -tgcctgt
- - - - - - - - - - - - - - - - - - - - - -tggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaca