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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGATGACGAAGATTTGGAGGATATCGGTCTAGGTGGCGGTGAGGTGGAGGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAGgtgcgggctgcgacgaccagtttgggggggggcgggttggggaggggagccttgcccattcggagggtaaagcacaactcgtcacggaaacgcggcaagc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06549
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22048299|gb|BQ808159.1|BQ808159
EST:     GGCAATCGACGAGTCGCAATTAGGGCCGCTGCCGGAGGTCCGCCACCAAG                         GCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTC
genomic: GGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAGgtgcgggctg ... gcgcacacagGCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTC
EST: gi|10780591|gb|AV637271.1|AV637271
EST:     GGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAG                         GCCCCATGCACATCAAGGACCGCAAGTAGTGGCGCGCCCGGGCGGAGGCTC
genomic: GGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAGgtgcgggctg ... gcgcacacagGCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTC
EST: gi|14237032|gb|BG855848.1|BG855848
EST:     GGCAATCGACGAGTCGCAATTAGGGCCGCTGCCGGAGGTCCGCCACCAAG                         GCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTC
genomic: GGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAGgtgcgggctg ... gcgcacacagGCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTC
EST: gi|6541570|gb|AV387354.1|AV387354
EST:     GGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAG                         GCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTC
genomic: GGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAGgtgcgggctg ... gcgcacacagGCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCGATGACGAAGATTTGGAGGATATCGGTCTAGGTGGCGGTGAGGTGGAGGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAGgtgcgggctgcgacgaccagtttgggggggggcgggttggggaggggagccttgcccattcggagggtaaagcacaactcgtcacggaaacgcggcaagc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaca