1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aattgtgaggtggaatgcgccgcactctatactccatgcgtcttcctgcttgtgatgacaaccacaccacaccacaccacaccgtttttacaccgctcagGCCACGCTGCTGGCGCGGCCGCACGGTCACCTGGAGCTGCACCGGCGCGGGGCGGAGCCCGAGTTCATTCAGCCCGTCATCGAGTTCCTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP06533 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCTGCCCGCTGGAGCTGGCGGCGCAGGCGGTGGAGCGCATCGGGCCGCAG GCCACGCTGCTGGCGCGGCCGCACGGTCACCTGGAGCTGCACCGGCGCGGG
genomic: TCTGCCCGCTGGAGCTGGCGGCGCAGGCGGTGGAGCGCATCGGGCCGCAGgtgtgcgtgt ... caccgctcagGCCACGCTGCTGGCGCGGCCGCACGGTCACCTGGAGCTGCACCGGCGCGGG
ctgcttgtgatgacaaccacaccacaccacaccacaccgtttttacaccgctcagGCCACGCTGCTGGCGCGGCCGCACGGTCACCTGGAGCTGCACCGGCGCGGGGCGGAGCCCGAGTTCATTCAGCCCGTCATCGAGTTCCTGCAG
tttttac CT-rich tract
tttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgtgaggtggaatgcgccgcactctatactccatgcgtcttcctgcttgtgatgacaaccacaccacaccacaccacaccgtttttacaccgctcagGCCACGCTGCTGGCGCGGCCGCACGGTCACCTGGAGCTGCACCGGCGCGGGGCGGAGCCCGAGTTCATTCAGCCCGTCATCGAGTTCCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - atactcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgttttt