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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAACCTCGTGTTCGACAAGAAGAGCTGCAATACCATGGGCAACCGCGAGTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAGgtgacgcagccagccggcctcgcgggccgctaggccaaccactcggcgggacgtgtctttccgacctttaaatgcccccgcgcccgctgctatccccaaactcgaactgttcctccgcacccttcccactttaccaag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06530
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785480|gb|AV642152.1|AV642152
EST:     GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAG                         GCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
genomic: GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAGgtgacgcagc ... ctttaccaagGCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
EST: gi|6550380|gb|AV396164.1|AV396164
EST:     GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAG                         GCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
genomic: GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAGgtgacgcagc ... ctttaccaagGCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
EST: gi|6549881|gb|AV395665.1|AV395665
EST:     GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAG                         GCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
genomic: GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAGgtgacgcagc ... ctttaccaagGCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
EST: gi|6550364|gb|AV396148.1|AV396148
EST:     GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAG                         GCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
genomic: GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAGgtgacgcagc ... ctttaccaagGCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
EST: gi|10783364|gb|AV640036.1|AV640036
EST:     GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAG                         GCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAG
genomic: GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAGgtgacgcagc ... ctttaccaagGCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAG
EST: gi|10784299|gb|AV640971.1|AV640971
EST:     GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAG                         GCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
genomic: GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAGgtgacgcagc ... ctttaccaagGCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
EST: gi|10784410|gb|AV641082.1|AV641082
EST:     GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAG                         GCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
genomic: GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAGgtgacgcagc ... ctttaccaagGCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
EST: gi|6550752|gb|AV396536.1|AV396536
EST:     GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAG                         GCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
genomic: GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAGgtgacgcagc ... ctttaccaagGCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
EST: gi|10788883|gb|AV626603.1|AV626603
EST:     GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAG                         GCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG
genomic: GTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAGgtgacgcagc ... ctttaccaagGCGTGGGCGAGTGGGAGAGCCCCATCACCAGCGCCTTCATCACAGAGAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCAACCTCGTGTTCGACAAGAAGAGCTGCAATACCATGGGCAACCGCGAGTCCAAGCTCAGGGCGCACGGCCAGAAGCGTGCAACACCCACGACCGCAGgtgacgcagccagccggcctcgcgggccgctaggccaaccactcggcgggacgtgtctttccgacctttaaatgcccccgcgcccgctgctatccccaaactcgaactgttcctccgcacccttcccactttaccaag

- - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC