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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGTGGGCGAGAGCCTTATGGAAACCATCGAGCAAATGGCACAAGAGGAAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACGgtgtgttggggaagcggggtagcttgggtgcccggtgccggccagagccttgctggcgcctgagttactgaagttgcactgttggggtacgaagctcgtg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06523
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14226869|gb|BG845685.1|BG845685
EST:     AAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACG                         TCCATGTCCAAAGCCATCAAGGAGTTCGTAACGGGCAAGGCGACCATGAAA
genomic: AAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACGgtgtgttggg ... gccgtcacagTCCATGTCCAAAGCCATCAAGGAGTTCGTAACGGGCAAGGCGACCATGAAA
EST: gi|14237950|gb|BG856766.1|BG856766
EST:     AAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACG                         TCCATGTCCAAAGCCATCAAGGAGTTCGTAACGGGCAAGGCGACCATGAAA
genomic: AAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACGgtgtgttggg ... gccgtcacagTCCATGTCCAAAGCCATCAAGGAGTTCGTAACGGGCAAGGCGACCATGAAA
EST: gi|14236776|gb|BG855608.1|BG855608
EST:     AAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACG                         TCCATGTCCAAAGCCATCAAGGAGTTCGTAACGGGCAAGGCGACCATGAAA
genomic: AAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACGgtgtgttggg ... gccgtcacagTCCATGTCCAAAGCCATCAAGGAGTTCGTAACGGGCAAGGCGACCATGAAA
EST: gi|14230515|gb|BG849331.1|BG849331
EST:     AAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACG                         TCCATGTCCAAAGCCATCAAGGAGTTCGTAACGGGCAAGGCGACCATGAAA
genomic: AAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACGgtgtgttggg ... gccgtcacagTCCATGTCCAAAGCCATCAAGGAGTTCGTAACGGGCAAGGCGACCATGAAA
EST: gi|15372755|gb|BI532181.1|BI532181
EST:     AAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACG                         TCCATGTCCAAAGCCATCAAGGAGTTCGTAACGGGCAAGGCGACCATGAAA
genomic: AAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACGgtgtgttggg ... gccgtcacagTCCATGTCCAAAGCCATCAAGGAGTTCGTAACGGGCAAGGCGACCATGAAA
EST: gi|22054655|gb|BQ811455.1|BQ811455
EST:     AAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACG                         TCCATGTCCAAAGCCATCAAGGAGTTCGTAACGGGCAAGGCGACCATGAAA
genomic: AAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACGgtgtgttggg ... gccgtcacagTCCATGTCCAAAGCCATCAAGGAGTTCGTAACGGGCAAGGCGACCATGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTGTGGGCGAGAGCCTTATGGAAACCATCGAGCAAATGGCACAAGAGGAAAAGCTTACGGAGGAGATTGCATTGGCGGTGCTCAAACAGTTCGACACGgtgtgttggggaagcggggtagcttgggtgcccggtgccggccagagccttgctggcgcctgagttactgaagttgcactgttggggtacgaagctcgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggggt