1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gccgtccctcaccccctgcccttcttctctaccgggcgcgacgaggcaacccccctgcgcccccgacctcttgccctttgccctctctcacttcccgcagTCCGGCACCTTTGACGTGTCCTGCTGCAACAGCGGCGCCCGGCTGGTGATCGCCGCCACCTCCGCCAGCTTGCGGCAGGCGGAGGCAGCGGTGGGCCACG
species | Chlamydomonas reinhardtii |
transcript | EDP06502 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGACGCTGAGCAATTGCCCCTCTTTCGCGGGCCGGCTCGTGCAAGGAAAG TCCGGCACCTTTGACGTGTCCTGCTGCAACAGCGGCGCCCGGCTGGTGATCEST: gi|6552111|gb|AV397895.1|AV397895
genomic: AGACGCTGAGCAATTGCCCCTCTTTCGCGGGCCGGCTCGTGCAAGGAAAGgcaggtcact ... cttcccgcagTCCGGCACCTTTGACGTGTCCTGCTGCAACAGCGGCGCCCGGCTGGTGATC
EST: AGACGCTGAGCAATTGCCCCTCTTTCGCGGGCCGGCTCGTGCAAGGAAAG TCCGGCACCTTTGACGTGTCCTGCTGCAACAGCGGCGCCCGGCTGGTGATCEST: gi|6550969|gb|AV396753.1|AV396753
genomic: AGACGCTGAGCAATTGCCCCTCTTTCGCGGGCCGGCTCGTGCAAGGAAAGgcaggtcact ... cttcccgcagTCCGGCACCTTTGACGTGTCCTGCTGCAACAGCGGCGCCCGGCTGGTGATC
EST: AGACGCTGAGCAATTGCCCCTCTTTCGCGGGCCGGCTCGTGCAAGGAAAG TCCGGCACCTTTGACGTGTCCTGCTGCAACAGCGGCGCCCGGCTGGTGATC
genomic: AGACGCTGAGCAATTGCCCCTCTTTCGCGGGCCGGCTCGTGCAAGGAAAGgcaggtcact ... cttcccgcagTCCGGCACCTTTGACGTGTCCTGCTGCAACAGCGGCGCCCGGCTGGTGATC
gcaacccccctgcgcccccgacctcttgccctttgccctctctcacttcccgcagTCCGGCACCTTTGACGTGTCCTGCTGCAACAGCGGCGCCCGGCTGGTGATCGCCGCCACCTCCGCCAGCTTGCGGCAGGCGGAGGCAGCGGTGGGCCACG
ctctcac putative branch site (score: 3)
cccccgacctcttgcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccgtccctcaccccctgcccttcttctctaccgggcgcgacgaggcaacccccctgcgcccccgacctcttgccctttgccctctctcacttcccgcagTCCGGCACCTTTGACGTGTCCTGCTGCAACAGCGGCGCCCGGCTGGTGATCGCCGCCACCTCCGCCAGCTTGCGGCAGGCGGAGGCAGCGGTGGGCCACG
- - tccctca
- - - - - - - - - - - - - - - - - - - - - - - caacccc