1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcacagcatccggcttttcttcctgctcttgcccttgcctttccaccttctgacaacacccgggcacgctttgcttgtccctccctttacaatccctcagGACGCGGAGATGCCGAACACGCTGTTTGGCAGCGTGGCTCTGATGTACATCAAGCAGGTGCGGCGGGTGGCGCGCAAGGCAGTGCTGCAGCGGGAGCTGG
species | Chlamydomonas reinhardtii |
transcript | EDP06497 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
ccttctgacaacacccgggcacgctttgcttgtccctccctttacaatccctcagGACGCGGAGATGCCGAACACGCTGTTTGGCAGCGTGGCTCTGATGTACATCAAGCAGGTGCGGCGGGTGGCGCGCAAGGCAGTGCTGCAGCGGGAGCTGG
ttctgac putative branch site (score: 2)
tccctccctttacaat putative PPT
tttacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacagcatccggcttttcttcctgctcttgcccttgcctttccaccttctgacaacacccgggcacgctttgcttgtccctccctttacaatccctcagGACGCGGAGATGCCGAACACGCTGTTTGGCAGCGTGGCTCTGATGTACATCAAGCAGGTGCGGCGGGTGGCGCGCAAGGCAGTGCTGCAGCGGGAGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
tcacagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - aacaccc