1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aacaataaccgaaaccccgccgcaacccaccccaccctaaatatatactttcatgaacggctgcaccccccaccctcgccccactcccacccccacacagGTCCTGCGCTACGGCAACGGGCAGTACTACCACCGTCACACCGACAGCCTGGAGAACGACTCGCCGCGGCTGGCCACTGTGCTGCTGTACCTGTCCGACC
species | Chlamydomonas reinhardtii |
transcript | EDP06489 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
tactttcatgaacggctgcaccccccaccctcgccccactcccacccccacacagGTCCTGCGCTACGGCAACGGGCAGTACTACCACCGTCACACCGACAGCCTGGAGAACGACTCGCCGCGGCTGGCCACTGTGCTGCTGTACCTGTCCGACC
ccccccaccctcgccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaataaccgaaaccccgccgcaacccaccccaccctaaatatatactttcatgaacggctgcaccccccaccctcgccccactcccacccccacacagGTCCTGCGCTACGGCAACGGGCAGTACTACCACCGTCACACCGACAGCCTGGAGAACGACTCGCCGCGGCTGGCCACTGTGCTGCTGTACCTGTCCGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - -accgaaa
- - - - - - - - - - - caaccca
- - - - - - - - - - - - - - - - -accctaa
- - - - - - - - - - - - - - - - - - - - atatata
- - - - - - - - - - - - - - - - - - - - - - - - - -catgaac