1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gcgagtcagcgagggcagaaatcatcgctgaaagttttctaattttaacggtttcgcagGTGCTGCGCCTCCTCCTCATCATGGACCACCAAGGCGGGAGCGTTCAGAGTTAAAGAAGCGGCAGGGGACGGAATATGAGGAGGATTCGGACTGGGACCA
species | Chlamydomonas reinhardtii |
transcript | EDP06487 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATCAAGGGTTGCCTGCACCGCGGCAAGCACCTCCACCGGCCCCGCAAG GTGCTGCGCCTCCTCCTCATCATGGACCACCAAGGCGGGAGCGTTCAGAGTEST: gi|49468277|gb|BP096138.1|BP096138
genomic: AGATCAAGGGTTGCCTGCACCGCGGCAAGCACCTCCACCGGCCCCGCAAGgcgagtcagc ... ggtttcgcagGTGCTGCGCCTCCTCCTCATCATGGACCACCAAGGCGGGAGCGTTCAGAGT
EST: AGATCAAGGGTTGCCTGCACCGCGGCAAGCACCTCCACCGGCCCCGCAAG GTGCTGCGCCTCCTCCTCATCATGGACCACCAAGGCGGGAGCGTTEST: gi|6550853|gb|AV396637.1|AV396637
genomic: AGATCAAGGGTTGCCTGCACCGCGGCAAGCACCTCCACCGGCCCCGCAAGgcgagtcagc ... ggtttcgcagGTGCTGCGCCTCCTCCTCATCATGGACCACCAAGGCGGGAGCGTT
EST: AGATCAAGGGTTGCCTGCACCGCGGCAAGCACCTCCACCGGCCCCGCAAG GTGCTGCGCCTCCTCCTCATCATGGACCACCAAGGCGGGAGCGTTCAGAG
genomic: AGATCAAGGGTTGCCTGCACCGCGGCAAGCACCTCCACCGGCCCCGCAAGgcgagtcagc ... ggtttcgcagGTGCTGCGCCTCCTCCTCATCATGGACCACCAAGGCGGGAGCGTTCAGAG
gtcagcgagggcagaaatcatcgctgaaagttttctaattttaacggtttcgcagGTGCTGCGCCTCCTCCTCATCATGGACCACCAAGGCGGGAGCGTTCAGAGTTAAAGAAGCGGCAGGGGACGGAATATGAGGAGGATTCGGACTGGGACCA
ttttaac putative branch site (score: 2)
aaagttttctaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgagtcagcgagggcagaaatcatcgctgaaagttttctaattttaacggtttcgcagGTGCTGCGCCTCCTCCTCATCATGGACCACCAAGGCGGGAGCGTTCAGAGTTAAAGAAGCGGCAGGGGACGGAATATGAGGAGGATTCGGACTGGGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT