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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggacatgggaggggcgaggcatgcgtgttctagggattgggagcgcactccgccgtgctcacaggacaggcacggtctgccaaaccgcacacaggaacgacgaaccacattcttttagagttccacgcgcgttcgccttacgcatccaaccttcccgccccgccccctgacccatgttctccccgcacacagCGTGCCTGGTCTGAGGCCGGGCAGGGCTCCGCCGGCGCCGTGTCGGGCCGCTCGTCCTCTTCCTCCGGGTCGGCTACGACCCGCCAAGCCGCGGTCGCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06484
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22061892|gb|BQ814523.1|BQ814523
EST:     TCGGCTGTGCGCGCATGCGTGCCGCCATGCTGGACCAGATGGCTCGCGAG                         CGTGCCTGGTCTGAGGCCGGGCAGGGCTCCGCCGGCGCCGTGTCGGGCCGC
genomic: TCGGCTGTGCGCGCATGCGTGCCGCCATGCTGGACCAGATGGCTCGCGAGgtaggacatg ... ccgcacacagCGTGCCTGGTCTGAGGCCGGGCAGGGCTCCGCCGGCGCCGTGTCGGGCCGC
EST: gi|22061894|gb|BQ814525.1|BQ814525
EST:     TCGGCTGTGCGCGCATGCGTGCCGCCATGCTGGACCAGATGGCTCGCGAG                         CGTGCCTGGTCTGAGGCCGGGCAGGGCTCCGCCGGCGCCGTGTCGGGCCGC
genomic: TCGGCTGTGCGCGCATGCGTGCCGCCATGCTGGACCAGATGGCTCGCGAGgtaggacatg ... ccgcacacagCGTGCCTGGTCTGAGGCCGGGCAGGGCTCCGCCGGCGCCGTGTCGGGCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacgcatccaaccttcccgccccgccccctgacccatgttctccccgcacacagCGTGCCTGGTCTGAGGCCGGGCAGGGCTCCGCCGGCGCCGTGTCGGGCCGCTCGTCCTCTTCCTCCGGGTCGGCTACGACCCGCCAAGCCGCGGTCGCCG
                           ccctgac  putative branch site (score: 3)
                                 cccatgttctcccc  CT-rich tract