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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcgtgcccgcatacggtatgcatgtacagtatgtgcggccgcggctgcgctggcatatcgattgggccgtgcgtggggcgggggatgctggatgtcaacaatcgggacttgtagcttgactacgcttgcgtgccccacggacgcactttacccaacaacccctcacccacccaccatcgctccgtcagGCTCCATGTGGGACTTTGCCAACGACGCGAACCTGCACCGCATCATCCGCGTCATGTGGGAGTCGGGCAAGGTGGTGTCGGCGGTGTGCCACGGCCCCAT

Basic information

species Chlamydomonas reinhardtii
transcript EDP06480
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15701214|gb|BI725519.1|BI725519
EST:     CAACGCCCAGCTCGCCAACTTTGACATCCTGTTCTTTGTGGGCGGCACAG                         GCTCCATGTGGGACTTTGCCAACGACGCGAACCTGCACCGCATCATCCGCG
genomic: CAACGCCCAGCTCGCCAACTTTGACATCCTGTTCTTTGTGGGCGGCACAGgtgcgtgcgt ... gctccgtcagGCTCCATGTGGGACTTTGCCAACGACGCGAACCTGCACCGCATCATCCGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccacggacgcactttacccaacaacccctcacccacccaccatcgctccgtcagGCTCCATGTGGGACTTTGCCAACGACGCGAACCTGCACCGCATCATCCGCGTCATGTGGGAGTCGGGCAAGGTGGTGTCGGCGGTGTGCCACGGCCCCAT
                          ccctcac  putative branch site (score: 3)
                                           tcgctcc  putative PPT