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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTGAAACTTGACTCGAAATTATGCGCAATAGACGACCATGAAGGCATCAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAGgtaagcgcgcttgagcgccaacatggcgaacaagttgaccaaggatgcttccagcagccagcgaactctgcccggcgcctgcttacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06459
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49466029|gb|BP093942.1|BP093942
EST:     CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAG                         GACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
genomic: CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAGgtaagcgcgc ... ctgcttacagGACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
EST: gi|6548195|gb|AV393979.1|AV393979
EST:     CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAG                         GACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
genomic: CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAGgtaagcgcgc ... ctgcttacagGACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
EST: gi|10790751|gb|AV628117.1|AV628117
EST:     CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAG                         GACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
genomic: CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAGgtaagcgcgc ... ctgcttacagGACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
EST: gi|6548498|gb|AV394282.1|AV394282
EST:     CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAG                         GACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
genomic: CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAGgtaagcgcgc ... ctgcttacagGACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
EST: gi|10791902|gb|AV629268.1|AV629268
EST:     CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAG                         GACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
genomic: CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAGgtaagcgcgc ... ctgcttacagGACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
EST: gi|10790650|gb|AV628016.1|AV628016
EST:     CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAG                         GACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
genomic: CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAGgtaagcgcgc ... ctgcttacagGACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
EST: gi|10789097|gb|AV626817.1|AV626817
EST:     CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAG                         GACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
genomic: CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAGgtaagcgcgc ... ctgcttacagGACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
EST: gi|49466688|gb|BP094601.1|BP094601
EST:     CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAG                         GACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT
genomic: CAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAGgtaagcgcgc ... ctgcttacagGACACGGACTATCCTGTTCGCGAACTCCTCTACCACAGCCCGCAGACGCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTTGAAACTTGACTCGAAATTATGCGCAATAGACGACCATGAAGGCATCAGGAGGACCGCAGAAGCTGCGGTTTACCATTCACGCGTGCTCGGGCGAGgtaagcgcgcttgagcgccaacatggcgaacaagttgaccaaggatgcttccagcagccagcgaactctgcccggcgcctgcttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC