1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acacggtaatcatcgggtcgttccgcgcaccacacgggcggggtgcgtgcacagtgccaaatgccagccccttcccccttgtgctttttttccaacacagGCGGGGCGGACGAGGTGGTGGCGGCGGTGAAGGCGGCGACAGAAGGGCGCGGCGTGGACACAGTGCTGGAGGCGGTGGGCTCCAACAGCGCGCTGCGCCT
species | Chlamydomonas reinhardtii |
transcript | EDP06455 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
cgtgcacagtgccaaatgccagccccttcccccttgtgctttttttccaacacagGCGGGGCGGACGAGGTGGTGGCGGCGGTGAAGGCGGCGACAGAAGGGCGCGGCGTGGACACAGTGCTGGAGGCGGTGGGCTCCAACAGCGCGCTGCGCCT
ccagccccttccccct CT-rich tract
ttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacggtaatcatcgggtcgttccgcgcaccacacgggcggggtgcgtgcacagtgccaaatgccagccccttcccccttgtgctttttttccaacacagGCGGGGCGGACGAGGTGGTGGCGGCGGTGAAGGCGGCGACAGAAGGGCGCGGCGTGGACACAGTGCTGGAGGCGGTGGGCTCCAACAGCGCGCTGCGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
acacggt
- - - - - - - - - - - - - - accacac
- - - - - - - - - - - - - - - - - - - - - -tgcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgccaaat