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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGCGCTGGGCTGCTGCTGCGTCTCAGTCCAGCCGGGACTACAGCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggggctttggcgcggcagcaggggcctgcgggcacaatcagtagcgggcattgcttgagccttggcctccttgctttccccaacgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06432
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9210824|gb|BE337739.1|BE337739
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|22070640|gb|BQ819978.1|BQ819978
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|10125692|gb|BE724396.1|BE724396
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|10780039|gb|AV636719.1|AV636719
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|23367078|gb|BU654897.1|BU654897
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|10127320|gb|BE726024.1|BE726024
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|8401024|gb|BE056658.1|BE056658
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|10127428|gb|BE726132.1|BE726132
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|161820517|gb|FC111022.1|FC111022
EST:     GCAGCACGCTCATGACCGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGCGCAAACGGATTCCTCGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|14227907|gb|BG846723.1|BG846723
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|8287169|gb|BE024728.1|BE024728
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|14232001|gb|BG850817.1|BG850817
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|16071753|gb|BI873749.1|BI873749
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|161804962|gb|FC089199.1|FC089199
EST:     GCAGCACGCTCATGACCGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGCGCAAACGGATTCCTCGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|161798274|gb|FC083483.1|FC083483
EST:     GCAGCACGCTCATGACCGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGCGCAAACGGATTCCTCGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|22063035|gb|BQ815052.1|BQ815052
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|9027633|gb|BE237673.1|BE237673
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|10781280|gb|AV637960.1|AV637960
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|14240801|gb|BG859617.1|BG859617
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|15373467|gb|BI532893.1|BI532893
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|7687076|gb|AW757724.1|AW757724
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|15695016|gb|BI719337.1|BI719337
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|8513744|gb|BE121639.1|BE121639
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|15696683|gb|BI720988.1|BI720988
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
EST: gi|15372575|gb|BI532001.1|BI532001
EST:     GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCG                         GTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG
genomic: GCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggg ... cccaacgcagGTAAGCGGCATTACTGCCACCGTTTTCGGTGCAAACGGATTCCTGGGCTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTGCGCTGGGCTGCTGCTGCGTCTCAGTCCAGCCGGGACTACAGCAGCACGCTCATGACTGCGGATAAGCTTGGCCCTGGAGGTCGCTCGTCGgtgcgtaggggctttggcgcggcagcaggggcctgcgggcacaatcagtagcgggcattgcttgagccttggcctccttgctttccccaacgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG