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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcattgcggtcttgctcgatgctttattgaggtctgatgggcgtttttgccgagctctagagcttaaattacgctgctgctccgctgttgccgtcccaatctaccaaaaccacatctcactgggacatgtgcctttgcccccctgaacgcggggagcgctacagGAGCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06424
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10789202|gb|AV626922.1|AV626922
EST:     CAACAAGGAGGAGCAGCTGCGCAAGAAGGAGGAGAGGCTGCAACAGGACG                         GAGCCG
genomic: CAACAAGGAGGAGCAGCTGCGCAAGAAGGAGGAGAGGCTGCAACAGGACGgtgagcattg ... agcgctacagGAGCCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacatctcactgggacatgtgcctttgcccccctgaacgcggggagcgctacagGAGCCG
    atctcac  putative branch site (score: 3)