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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agacctgtgacatctgcaacccttacccaggccagctgtctatcactgccgccttggcgccttgtaacagcccccctccatggtcgacacttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTGCTGCCCCAGACCAGCCGCAACGCGCTGGAGGAGGTCAAGCTCAAGTTCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP06420
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771746|gb|AV622569.1|AV622569
EST:     TCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: TCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|22066573|gb|BQ817003.1|BQ817003
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|10768462|gb|AV619287.1|AV619287
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|10769471|gb|AV620296.1|AV620296
EST:     CAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: CAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|7615766|gb|AW721206.1|AW721206
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGTTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|15702370|gb|BI726675.1|BI726675
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAAAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|10781725|gb|AV638405.1|AV638405
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|23359892|gb|BU647712.1|BU647712
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|10788264|gb|AV644936.1|AV644936
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|22061437|gb|BQ814239.1|BQ814239
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCC
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCC
EST: gi|6548958|gb|AV394742.1|AV394742
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|10768636|gb|AV619461.1|AV619461
EST:     GCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|6548260|gb|AV394044.1|AV394044
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|161815497|gb|FC104849.1|FC104849
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACTTTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|6548815|gb|AV394599.1|AV394599
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|22069015|gb|BQ818724.1|BQ818724
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|34985812|gb|CF559729.1|CF559729
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|161820072|gb|FC107574.1|FC107574
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACTCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|22073721|gb|BQ823059.1|BQ823059
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|22062672|gb|BQ814885.1|BQ814885
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACAAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|6543642|gb|AV389426.1|AV389426
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|34982392|gb|CF556309.1|CF556309
EST:     CCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: CCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|34985455|gb|CF559372.1|CF559372
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|10777076|gb|AV633756.1|AV633756
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|6545141|gb|AV390925.1|AV390925
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|6548776|gb|AV394560.1|AV394560
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|161815361|gb|FC100982.1|FC100982
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAGG                         GGCTGCGTGCCGGGCACCAAGAAGCGCNGC-ATCACTCTGCGCCGC
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGC-GCCATCACCCTGCGCCGC
EST: gi|6546279|gb|AV392063.1|AV392063
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|161801138|gb|FC084787.1|FC084787
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACTCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|6550811|gb|AV396595.1|AV396595
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|6547729|gb|AV393513.1|AV393513
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|6546962|gb|AV392746.1|AV392746
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|6540674|gb|AV386458.1|AV386458
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|22067945|gb|BQ817912.1|BQ817912
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAAAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|15702371|gb|BI726676.1|BI726676
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|34985454|gb|CF559371.1|CF559371
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCCACCCT
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATC-ACCCT
EST: gi|7616259|gb|AW721699.1|AW721699
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|161792436|gb|FC080091.1|FC080091
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACTCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|10777238|gb|AV633918.1|AV633918
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGTGTGCCGG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGG
EST: gi|6548143|gb|AV393927.1|AV393927
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|161791379|gb|FC082305.1|FC082305
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACTCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|161794594|gb|FC080845.1|FC080845
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACTCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|10776062|gb|AV632742.1|AV632742
EST:     GCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|34993784|gb|CF567701.1|CF567701
EST:     CGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: CGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|161810645|gb|FC095043.1|FC095043
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACTCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|22075738|gb|BQ824514.1|BQ824514
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|49468312|gb|BP096173.1|BP096173
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|22073720|gb|BQ823058.1|BQ823058
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|14238040|gb|BG856856.1|BG856856
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|10775618|gb|AV632298.1|AV632298
EST:     TGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATACA-G                         GGCTGCGTGCCGGGCACCA
genomic: TGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGAT-CAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCA
EST: gi|7593570|gb|AW707821.1|AW707821
EST:     GTGGCTTNNNNNNNTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|34984667|gb|CF558584.1|CF558584
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|18690252|gb|BM519100.1|BM519100
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|22069839|gb|BQ819331.1|BQ819331
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|161811046|gb|FC094456.1|FC094456
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACTCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|22069640|gb|BQ819185.1|BQ819185
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|22049436|gb|BQ808800.1|BQ808800
EST:     GTGGCTTCCCCCACTTCGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|10788263|gb|AV644935.1|AV644935
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|22064049|gb|BQ815578.1|BQ815578
EST:     GTGGCTTCCCCCAATACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGTTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|23359891|gb|BU647711.1|BU647711
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|22075050|gb|BQ823826.1|BQ823826
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|161799263|gb|FC084979.1|FC084979
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACTCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|10771528|gb|AV622351.1|AV622351
EST:     GAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|6543583|gb|AV389367.1|AV389367
EST:     GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTGGCTTCCCCCACTACGGTGTGGTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
EST: gi|10771381|gb|AV622204.1|AV622204
EST:     GTCAGCGAGGACTACCTGATGATCAAG                         GGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG
genomic: GTCAGCGAGGACTACCTGATGATCAAGgtgagcgctg ... ttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgccgccttggcgccttgtaacagcccccctccatggtcgacacttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTGCTGCCCCAGACCAGCCGCAACGCGCTGGAGGAGGTCAAGCTCAAGTTCA
                ttgtaac  putative branch site (score: 2)
                                            cttgtcc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agacctgtgacatctgcaacccttacccaggccagctgtctatcactgccgccttggcgccttgtaacagcccccctccatggtcgacacttgtccgcagGGCTGCGTGCCGGGCACCAAGAAGCGCGCCATCACCCTGCGCCGCTCGCTGCTGCCCCAGACCAGCCGCAACGCGCTGGAGGAGGTCAAGCTCAAGTTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - accctta
- - - - - - - - - - - - - - - - - - tgtctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcgacac