1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caagccttctcctcctgtctcacgccccagcacccgtttgctcaccggccacccgatttactgcaagcccgaacactccacccggcctgccccctatcagGCAAGGTGGTGGGCACCACTGTGGCCGAGAACGGACCCATGTTGGCCGAGCTGCTGCCGCCCGGCCCTGACCCCGCCGGCTTCGGGCTGCCGGCGGTGCA
species | Chlamydomonas reinhardtii |
transcript | EDP06408 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTGTGGGCCCTGTACGCGCAGGCCGCACAGCTGCTGCTGGCGCCGGGGG GCAAGGTGGTGGGCACCACTGTGGCCGAGAACGGACCCATGCTGGCCGAGCEST: gi|15701317|gb|BI725622.1|BI725622
genomic: GGTGTGGGCGCTGTACGCGCAGGCCGCACAGCTGCTGCTGGCGCCGGGGGgtgagctggt ... cccctatcagGCAAGGTGGTGGGCACCACTGTGGCCGAGAACGGACCCATGTTGGCCGAGC
EST: GGTGTGGGCGCTGTACGCGCAGGCCGCACAGCTGCTGCTGGCGCCGGGGG GCAAGGGTGGTGGGCACCACTGTGGCCGAGAACGGACCCATGCTGGCCGAG
genomic: GGTGTGGGCGCTGTACGCGCAGGCCGCACAGCTGCTGCTGGCGCCGGGGGgtgagctggt ... cccctatcagGCAAGG-TGGTGGGCACCACTGTGGCCGAGAACGGACCCATGTTGGCCGAG
cggccacccgatttactgcaagcccgaacactccacccggcctgccccctatcagGCAAGGTGGTGGGCACCACTGTGGCCGAGAACGGACCCATGTTGGCCGAGCTGCTGCCGCCCGGCCCTGACCCCGCCGGCTTCGGGCTGCCGGCGGTGCA
cctgccccct CT-rich tract
atttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagccttctcctcctgtctcacgccccagcacccgtttgctcaccggccacccgatttactgcaagcccgaacactccacccggcctgccccctatcagGCAAGGTGGTGGGCACCACTGTGGCCGAGAACGGACCCATGTTGGCCGAGCTGCTGCCGCCCGGCCCTGACCCCGCCGGCTTCGGGCTGCCGGCGGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - gtctcac
- - - - - - - - - - - - - ccagcac
- - - - - - - - - - - - - - - - - -gtttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgaaca