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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcatggctcggcatggcgggtgcaccgtcatgctcttgtacctatagctatcactctggacattgatgctcccgcccgctatgaagcaccactgactggcggtatcgcgtgtcgcatgcgatagcagAGTCCACCAAGGACAACACCATCACGTGGAGCAGCGTGGACCGCCTCAACATGTCCATAGGCCTGCTCTATGCGCTATGCAACCACGCAATTGAGAACGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06404
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14235484|gb|BG854300.1|BG854300
EST:     GCCGGCACTGGCGGAGGGCTTGACAGAGGAGCAGGCGCTGGCGGCGGCGG                         AGTCCACCAAGGACAACACCATCACGTGGAGCAGCGTGGACCGCCTCAACA
genomic: GCCGGCACTGGCGGAGGGCTTGACAGAGGAGCAGGCGCTGGCGGCGGCGGgtgagtcatg ... gcgatagcagAGTCCACCAAGGACAACACCATCACGTGGAGCAGCGTGGACCGCCTCAACA
EST: gi|14235485|gb|BG854301.1|BG854301
EST:     GCCGGCACTGGCGGAGGGCTTGACAGAGGAGCAGGCGCTGGCGGCGGCGG                         AGTCCACCAAGGACAACACCATCACGTGGAGCAGCGTGGACCGCCTCAACA
genomic: GCCGGCACTGGCGGAGGGCTTGACAGAGGAGCAGGCGCTGGCGGCGGCGGgtgagtcatg ... gcgatagcagAGTCCACCAAGGACAACACCATCACGTGGAGCAGCGTGGACCGCCTCAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcccgctatgaagcaccactgactggcggtatcgcgtgtcgcatgcgatagcagAGTCCACCAAGGACAACACCATCACGTGGAGCAGCGTGGACCGCCTCAACATGTCCATAGGCCTGCTCTATGCGCTATGCAACCACGCAATTGAGAACGG
                 cactgac  putative branch site (score: 2)